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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttctttccgaaggatgatatcctcagcattcttcttggtagttggaatgtcatctgtcattatgattgattgcttttttcccctggcggaacctctgtctcacactggagtatgtatcagAAAACAGCATGGCTTGCAATATTTTACATGCATATACCATCGGGATATGCACTTGGCTATGTCTACGGTTGTTTG

Basic information

species Glycine max
transcript GLYMA15G06660.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06660.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0282g00040.t01 (Vitis vinifera), 3'ss of exon 2
gtttgtttctttccgaaggatgatatcctcagcattcttcttggtagttggaatgtcatctgtcattatgattgattgcttttttcccctggcggaacctctgtctcacactggagtatgtatcagAAAACAGCATGGCTTGCAATATTTTACATGCATATACCATCGGGATATGCACTTGGCTATGTCTACGGTTGTTTG
                         | ||      |  | |  ||  ||   |     | |   ||| |  ||   | | ||||   |       ||||| |||   || |||   | |||||||||||||||| ||||| |||||||| ||||||  ||||||||| |||  |||| | |||||||| || ||| | |||
-------------------------ttctggatccttatttctgtgtttatcactaattgttctattctctttttattccttttcatctgtattaaacctgtgtgataccctgtc-tttgtatcagAAAACAGCCTGGCTGGCAATATTCTACATGTGTATACCATCTGGAATTGCAGTCGGCTATGTTTATGGTGGATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattgcttttttcccctggcggaacctctgtctcacactggagtatgtatcagAAAACAGCATGGCTTGCAATATTTTACATGCATATACCATCGGGATATGCACTTGGCTATGTCTACGGTTGTTTG
                               gtctcac  putative branch site (score: 3)
        tttttt  TA-rich tract