1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctaatattgtgtgattcttgtaaagtctaaatacgaaaatatatgtctatgatttatagaacatttccctatttgactttggttatgtatacctatgtagTTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAACACTCCTTTATATGTGGTTCATGTAATGAGCATTGATGCAATGGAAGAAA
species | Glycine max |
transcript | GLYMA15G06100.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATAACTGGTCCTGAGGGACATGCTCTTTCACGGCCTGCAGTG TT-GAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAACEST: gi|19053668|gb|BM732335.1|BM732335
genomic: AATAACTGGTCCTGAGGGACATGCTCTTTCACGGCCTGCAGTGgtaaattctc ... acctatgtagTTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAAC
EST: AACTTGGAATAACTGGTCCTGAGGGACATGCTCTTTCACGGCCTGCAGTG TTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAACEST: gi|27445929|gb|CA953052.1|CA953052
genomic: AACTTGGAATAACTGGTCCTGAGGGACATGCTCTTTCACGGCCTGCAGTGgtaaattctc ... acctatgtagTTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAAC
EST: GACATGCTCTTTCACGGCCTGCAGTG TTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAACEST: gi|17400710|gb|BM177492.1|BM177492
genomic: GACATGCTCTTTCACGGCCTGCAGTGgtaaattctc ... acctatgtagTTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAAC
EST: AACTTGGAATAACTGGTCCTGAGGGACATGCTCTTTCACGGCCTGCAGTG TTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAACEST: gi|193561837|gb|FK516856.1|FK516856
genomic: AACTTGGAATAACTGGTCCTGAGGGACATGCTCTTTCACGGCCTGCAGTGgtaaattctc ... acctatgtagTTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAAC
EST: GACATGCTCTTTCACGGCCTGCAGTG TTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAAC
genomic: GACATGCTCTTTCACGGCCTGCAGTGgtaaattctc ... acctatgtagTTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAAC
tctatgatttatagaacatttccctatttgactttggttatgtatacctatgtagTTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAACACTCCTTTATATGTGGTTCATGTAATGAGCATTGATGCAATGGAAGAAA
atttgac putative branch site (score: 4)
atttatagaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaatattgtgtgattcttgtaaagtctaaatacgaaaatatatgtctatgatttatagaacatttccctatttgactttggttatgtatacctatgtagTTGGAAGGAGAGGCAACTGCCCGTGCTATTCGTTTAGCTGATTTTGTGAACACTCCTTTATATGTGGTTCATGTAATGAGCATTGATGCAATGGAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -tgtgtga
- - - - - - - - - - - - - - - - - - - - - - gtctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactttg