1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcaaggcttcaagcctatttacttggtattttatttttatgttctgttttatatccctatctactcacttgtgatattttctttgacttccatacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGA
species | Glycine max |
transcript | GLYMA15G05490.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|207708265|gb|GD692061.1|GD692061
genomic: ATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: AAGTAAACACTTACATTAGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|254325987|gb|GR838868.1|GR838868
genomic: AAGT-AACACTTACATT-GGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: GATGCTGACA-CATCTCTAGATCAAGTA-CACTTACATTGGAAAGCTGAG ATCAA-TTTTCTTGGEST: gi|208319163|gb|GE113324.1|GE113324
genomic: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGG
EST: TGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|208335392|gb|GE133365.1|GE133365
genomic: TGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: GTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|208096689|gb|GD892914.1|GD892914
genomic: GTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTAAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|9440416|gb|BE440921.1|BE440921
genomic: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|193403081|gb|FK369027.1|FK369027
genomic: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|6912855|gb|AW394339.1|AW394339
genomic: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|207819081|gb|GD793215.1|GD793215
genomic: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: ATCAAGTAAACAACTTAACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|193683959|gb|FK621445.1|FK621445
genomic: ATCAAGT-AAC-ACTT-ACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: TCTAGATCAAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGEST: gi|208206002|gb|GE002003.1|GE002003
genomic: TCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGG
EST: TGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|208204875|gb|GE005776.1|GE005776
genomic: TGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: TGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATAEST: gi|208323663|gb|GE122234.1|GE122234
genomic: TGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
EST: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAG ATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
genomic: GATGCTGACAACATCTCTAGATCAAGTAACACTTACATTGGAAAGCTGAGgtgagttttc ... catacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATA
gttttatatccctatctactcacttgtgatattttctttgacttccatacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGA
ttttctttgacttcc CT-rich tract
atattttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaggcttcaagcctatttacttggtattttatttttatgttctgttttatatccctatctactcacttgtgatattttctttgacttccatacaccagATCAAATTTTCTTGGTACAAAGTTCATTATATACGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - -ttcaagc
- - - - - - - - - - - - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccctatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttgtg