1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttatcctctatgtaagcagatgtctctgatttaatcatcagtgctatttgtttctatcattatttctatatttttatgtcttattctgaactgttccagAAATTCAGAAAGGAAGACAAGCAACTCTCAGGAACAGAGGCATATATGCGAAGATCTAGTTCCTTGCAAAGA
species | Glycine max |
transcript | GLYMA15G05410.5 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCAGAAAGGAAGACAAGCAACTCTCAGGAACAGAGGCATATATGCGAEST: gi|208123002|gb|GD923232.1|GD923232
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatcttt ... actgttccagAAATTCAGAAAGGAAGACAAGCAACTCTCAGGAACAGAGGCATATATGCGA
EST: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCAGAAAGGAAGACAAGCAACTCTCAGGAACAGAGGCATATAEST: gi|254317253|gb|GR826198.1|GR826198
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatcttt ... actgttccagAAATTCAGAAAGGAAGACAAGCAACTCTCAGGAACAGAGGCATATA
EST: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAG AAATTCAGAAAGGAAGACAAGCAACTCTCACGAACAGAGGCATATATGCGA
genomic: TGGTTAATAGGAACAAAAGAATGTTGGGCCAGCTTTTGGGAACTCTCGAGgtatatcttt ... actgttccagAAATTCAGAAAGGAAGACAAGCAACTCTCAGGAACAGAGGCATATATGCGA
tatttgtttctatcattatttctatatttttatgtcttattctgaactgttccagAAATTCAGAAAGGAAGACAAGCAACTCTCAGGAACAGAGGCATATATGCGAAGATCTAGTTCCTTGCAAAGA
ctgttcc CT-rich tract
tttctatcattatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatcctctatgtaagcagatgtctctgatttaatcatcagtgctatttgtttctatcattatttctatatttttatgtcttattctgaactgttccagAAATTCAGAAAGGAAGACAAGCAACTCTCAGGAACAGAGGCATATATGCGAAGATCTAGTTCCTTGCAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG