1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactctattgcattgttttataacactagtttaaactcacctgccaaaagcggacaagcatcattggtgcttccaatatttacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTTTGTCACCAGAGGCTGCTCGTATACTG
species | Glycine max |
transcript | GLYMA15G05360.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGEST: gi|31460855|gb|CD402883.1|CD402883
genomic: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctatt ... atatttacagGAGTTGTGGAG
EST: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTTEST: gi|151409671|gb|EV279479.1|EV279479
genomic: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctatt ... atatttacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTT
EST: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTTEST: gi|298178045|gb|HO027428.1|HO027428
genomic: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctatt ... atatttacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTT
EST: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTEST: gi|213597447|gb|DB962525.1|DB962525
genomic: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctatt ... atatttacagGAGTTGTGGAGCT
EST: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTT
genomic: GATGGAACCCTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctatt ... atatttacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTT
ttaaactcacctgccaaaagcggacaagcatcattggtgcttccaatatttacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTTTGTCACCAGAGGCTGCTCGTATACTG
aactcac putative branch site (score: 2)
aatatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctattgcattgttttataacactagtttaaactcacctgccaaaagcggacaagcatcattggtgcttccaatatttacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGCGACGAAGGAAAGCCTTTGTCACCAGAGGCTGCTCGTATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT