1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atctaaatcaaaataataattcttcatgcatatacaaggcaggggttaataattccatgttaactgaatttctttcttatgcctgaactgaacctgacagAATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGGATCCATCCTATAGAGTCCCTCTTTGACGTGGATTCTCCAAGAATCAGTAGTGG
species | Glycine max |
transcript | GLYMA15G05290.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGAGTGGTCGTGGTCAATTGGAAATTACTTATTTGGATGAAGATCTACG AATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGGATCCEST: gi|18732348|gb|BM526986.1|BM526986
genomic: GGGAGTGGTCGTGGTCAATTGGAAATTACTTATTTGGATGAAGATCTACGgtaagtcagt ... aacctgacagAATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGGATCC
EST: GNGAGTGGTCGTGGTCAATTGGAAATTACTTATTTGGATGAAGATCTACG AATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGEST: gi|31468189|gb|CD410217.1|CD410217
genomic: GGGAGTGGTCGTGGTCAATTGGAAATTACTTATTTGGATGAAGATCTACGgtaagtcagt ... aacctgacagAATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTG
EST: GGGAGTGGTCGTGGTCAATTGGAAATTACTTATTTGGATGAAGATCTACG AATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGGATCC
genomic: GGGAGTGGTCGTGGTCAATTGGAAATTACTTATTTGGATGAAGATCTACGgtaagtcagt ... aacctgacagAATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGGATCC
ttaataattccatgttaactgaatttctttcttatgcctgaactgaacctgacagAATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGGATCCATCCTATAGAGTCCCTCTTTGACGTGGATTCTCCAAGAATCAGTAGTGG
tgttaac putative branch site (score: 2)
aatttctttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctaaatcaaaataataattcttcatgcatatacaaggcaggggttaataattccatgttaactgaatttctttcttatgcctgaactgaacctgacagAATATCAAGAGGAAATAGAGGTAATTTGTTCATCTTGAAAATGGTGGATCCATCCTATAGAGTCCCTCTTTGACGTGGATTCTCCAAGAATCAGTAGTGG
- - - - -aaaataa
- - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - gcagggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgtt