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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaccagccagattacatgtagagagcattctagttagattcatgtttattctttttggagaaagatgtttatggactcattggaccttgcataccttatctctccatcgtaatcgttttcccatcatctggtatagatatcaaatactcgttgtcattctttgttgtaataatctaacagGGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCCATCTTACAGAGTTCCTGAATGATGACATTGTCAGCATTGCAATGCAGTA

Basic information

species Glycine max
transcript GLYMA15G05210.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05210.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os03g49720.1 (Oryza sativa), 3'ss of exon 5
gtgagttaccagccagattacatgtagagagcattctagttagattcatgtttattctttttggagaaagatgtttatggactcattggaccttgcataccttatctctccatcgtaatcgtt-ttcccatcatctggtatagatatcaaatactcgttgtcattctttgttgtaataatctaa------cagGGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCCATCTTACAGAGTTCCTGAATGATGACATTGTCAGCATTGCAATGCAGTA-
                                                                                          ||   |||   | || ||    |  ||  | |  || | |    ||  |  ||  |||||  | |   | ||| |  |  ||| || ||  |        |||||  |||||||| ||||| || || |||||||| ||||||||||| || ||| | |||||||||||    | || |  || | |    ||   |||| || 
------------------------------------------------------------------------------------------cccctcatga-tgatgtccagttgatagacatggttactagtcgctaatgcagtaatcaatgattaagt-tcactaat-attgcaacaaattgctggtttcagGGCCTCAAGAGGCGATAAGGGGAATTTGTTCATACTGAAAATGGTTGACCCAACATACAGAGTTCCATTGTAATAAT-TTCTAAATGCTGATGTGCACTAC

upper sequence: GLYMA15G05210.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0034g01210.t01 (Vitis vinifera), 3'ss of exon 5
gtgagttaccagccagattacatgtagagagcattctagttagattcatgtttattctttttggagaaagatgtttatggactcattggaccttgcataccttatctctccatcgtaatcgttttcccatcatctggtatagatatcaaatactcgttgtcattctttgttgtaataatctaacagGGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCCATCTTACAGAGTTCCTGAATGATGACATTGTCAGCATTGCAATGCAGTA---
                                                                    |  |  || | || |  |      ||  |     ||| |||  |||   | | ||   ||||     | || ||| ||  |  |   | ||   ||||   |||           ||| ||||||||||| || |||||||||||||||||| |||||||| | || ||||| ||| | ||||||| || ||||   ||   | ||  || ||||| |   
--------------------------------------------------------------------aagtacttgttgatttttca----ttcgaagttctatatctatatc--taccattactccatttaaggatacagaaatttacaaaagggtggt-ttctccattg-----------cagAGTATCAAGAGGCGACAAAGGAAACTTGTTCATCTTGAAAATGATCGACCCATCCTACCGGGTTCCTGTATAATGA---TGCTTGAATCACACTGCAGAAGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31462753|gb|CD404781.1|CD404781
EST:     GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG                         GGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCC
genomic: GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCGgtgagttacc ... aatctaacagGGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCC
EST: gi|31458564|gb|CD400592.1|CD400592
EST:     GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG                         GGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCC
genomic: GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCGgtgagttacc ... aatctaacagGGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCC
EST: gi|31458909|gb|CD400937.1|CD400937
EST:     GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG                         GGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCC
genomic: GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCGgtgagttacc ... aatctaacagGGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCC
EST: gi|17153711|gb|BM143644.1|BM143644
EST:     GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG                         GGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCC
genomic: GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCGgtgagttacc ... aatctaacagGGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctggtatagatatcaaatactcgttgtcattctttgttgtaataatctaacagGGTATCAAGAGGTGATAAAGGAAACTTGTTCATCCTGAAAATGGTGGATCCATCTTACAGAGTTCCTGAATGATGACATTGTCAGCATTGCAATGCAGTA
      tatagatatcaaata  TA-rich tract