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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtatcatggcaaattgacaattgcattcaacatcccattaactgcatagttggtaaattgaccttctaatcataaccagaaattgattttctggtgaagGCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTACAGCCTTCTGTTGGGATTACATTTCCGAGCTCCAGAGAATATGAAGGCC

Basic information

species Glycine max
transcript GLYMA15G05150.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05150.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0034g01790.t01 (Vitis vinifera), 3'ss of exon 8
tgtatcatggcaaattgacaattgcattcaacatcccattaactgc----atagttggtaaattgaccttctaatcataaccagaaattgattt-tctggtgaagGCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTACAGCCTTCTGTTGGGATTACATTTCCGAGCTCCAGAGAATATGAAGGCC
           ||  || | ||  | |  ||  |   |||   ||      |   |  |   || |     | | ||| |    |  ||  | | |||  || || |||||||| ||||| |||| ||||||||| ||||| || ||||||||||| ||||||||||||||| |||||||  | ||||| ||| || ||||| ||
-----ttctttaatatgcccataccctagaatgttttattttttgttgttgtctctactgggtttagtaattcagcatgaattcattttcttctctcttttgcagACAAATTTCTCTAGACTGCATGTTCTTGGAATCTCAACAGATAATTGATTATAGCCTTCTGTTGGGACTACATTTTAGTGCTCCTGAGCATCTGAAGACC

upper sequence: GLYMA15G05150.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ04955 (Selaginella moellendorffii), 3'ss of exon 5
tgtatcatggcaaattgacaattgcattcaacatcccattaactgcatagttggtaaattgaccttctaatcataaccagaaattgattttctggtgaagGCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTACAGCCTTCTGTTGGGATTACATTTCCGAGCTCCAGAGAATATGAAGGCC
                           | |   |||   | | |   ||  ||| |  | |   |||| |   |  ||  ||| ||||        ||||||| ||  ||   |||||||||||| | |||||||| |||||||| ||||||||||| ||||||||  | || || ||||| ||| |   |    |  | 
--------------------------gtaagtttccttctcattcttta--tgggagttcg---ttctgacattttccttaaactgat--------gaagGCAGATAGCCTCTGATTGCAAGTTCCTCGAGTCTCAACATATAATGGATTACAGCCTCCTGTTGGGGCTTCACTTTCGAGCGCCACACTTTTATCAACCT

upper sequence: GLYMA15G05150.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ05102 (Selaginella moellendorffii), 3'ss of exon 5
tgtatcatggcaaattgacaattgcattcaacatcccattaactgcatagttggtaaattgaccttctaatcataaccagaaattgattttctggtgaagGCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTACAGCCTTCTGTTGGGATTACATTTCCGAGCTCCAGAGAATATGAAGGCC
                           | |   ||    | | |    |  ||| |  | |   |||| |   |  ||  ||| ||||        ||||||| ||  ||   |||||||||||| | |||||||| |||||||| ||||||||||| ||||||||  | || || ||||| ||| |   |    |  | 
--------------------------gtaagtttctttctcattcttca--tgggagttcg---ttctgacattttccttaaactgat--------gaagGCAGATAGCCTCTGATTGCAAGTTCCTCGAGTCTCAACATATAATGGATTACAGCCTCCTGTTGGGGCTTCACTTTCGAGCGCCACACTTTTATCAACCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677331|gb|BQ629682.1|BQ629682
EST:     GTTTCACATGGATAAAAAATTGCGAGAATCCCTACTCAA                         GCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTA
genomic: GTTTCACATGGATAAAAAATTGCGAGAATCCCTACTCAAgtaagttgct ... tctggtgaagGCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTA
EST: gi|10237549|gb|BE806437.1|BE806437
EST:     CTAAAATATGAGTTTCACATGGATAAAAAATTGCGAGAATCCCTACTCAA                         GCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTA
genomic: CTAAAATATGAGTTTCACATGGATAAAAAATTGCGAGAATCCCTACTCAAgtaagttgct ... tctggtgaagGCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagttggtaaattgaccttctaatcataaccagaaattgattttctggtgaagGCAAATTTCCCTAGATTGCAAGTTCTTGGAGTCTCAGCATATAATTGATTACAGCCTTCTGTTGGGATTACATTTCCGAGCTCCAGAGAATATGAAGGCC
                                          ttttct  CT-rich tract
                                   aaattgatttt  TA-rich tract