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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttaggatcatagagtatattgctatgactttttatacttttgctgttatggttgtttcattcacttggttgatgttatttgctccatctaacagGCAATTCAAATCATTTCATGGCTGGCAAAGTACAAGTCCAGCACTTTGAAAAAGCATAAGTTGATCATACCTATTCTACAAGTTTTATGCCCTTTGCTTG

Basic information

species Glycine max
transcript GLYMA15G05090.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05090.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------------------gttggttaggatcatagagtatattgctatgactttttatacttttgctgtt-atggttgtttcattca---cttggttgatgttatttgctcc---atctaacagGCAATTCAAATCATTTCATGGCTGGCAAAGTACAAGTCCAGCACTTTGAAAAAGCATAAGTTGATCATACCTATTCTACAAGTTTTATGCCCTTTGCTTG
                                                            |  || ||||   |   |  ||||   ||      | ||||||| || ||  |   ||  || |  |   |||| |  ||  | |||| |     || || ||||| ||||| |||||||||||||| ||||| ||||||||||   || | |||||||||||| || | || || || || |||||| | ||||| || ||||
gttaggaaggagatgaaatataatttttcctgtatttctattgttctagccaatcctaactatttgggatatca--tttcattgagttggtgagatgtactttttctatttgttcctggatcctgaatatcttgttccatcct-tttgttttgaaatatatcagGCTATTCAGATCATTTCATGGCTAGCAAAATACAAGTCCAATTCTCTAAAAAAGCATAAGCTGGTTATCCCAATACTGCAAGTTATGTGCCCATTACTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163918319|gb|EH039094.1|EH039094
EST:     CCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAG                         GCAATTCAAATCATTTCATGGCTGGCAAAGTACAAGTCCAGCACTTTGAAA
genomic: CCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAGgttggttagg ... catctaacagGCAATTCAAATCATTTCATGGCTGGCAAAGTACAAGTCCAGCACTTTGAAA
EST: gi|208125455|gb|GD923775.1|GD923775
EST:     CCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAG                         GCAATTCAAATCATT
genomic: CCCTTGAGGTTTGCTCAAGTCAAAATTTAGAGTCTAACACACGTCATCAGgttggttagg ... catctaacagGCAATTCAAATCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgttatggttgtttcattcacttggttgatgttatttgctccatctaacagGCAATTCAAATCATTTCATGGCTGGCAAAGTACAAGTCCAGCACTTTGAAAAAGCATAAGTTGATCATACCTATTCTACAAGTTTTATGCCCTTTGCTTG
                           ggttgat  putative branch site (score: 5)
                                      tttgctcc  putative PPT
                                atgttattt  TA-rich tract