1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcaccatgctttttattttgcaattgtaattttatttttacttgaattcttactcaacctttttttttgttttcttgaacttggattggatgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCAGCAACAACAAGAAAGACAAGATTGCGATAGATGCCATTACTGGGGCAG
species | Glycine max |
transcript | GLYMA15G04300.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTAGCAGTAACTGGGGEST: gi|151394173|gb|EV264044.1|EV264044
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGT-GCAGTAACTGGGG
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|209724919|gb|BW669608.1|BW669608
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|26267988|gb|CA819051.1|CA819051
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|151401884|gb|EV271697.1|EV271697
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|151402473|gb|EV272286.1|EV272286
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|209720222|gb|BW674562.1|BW674562
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|209720223|gb|BW674563.1|BW674563
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|31468370|gb|CD410398.1|CD410398
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|209697438|gb|BW675583.1|BW675583
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|31463245|gb|CD405273.1|CD405273
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|254344722|gb|GR851312.1|GR851312
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|151397154|gb|EV267027.1|EV267027
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|192306327|gb|FG995107.1|FG995107
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|209697437|gb|BW675582.1|BW675582
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|31474890|gb|CD416918.1|CD416918
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|192306328|gb|FG995108.1|FG995108
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|193329078|gb|FK293082.1|FK293082
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGGGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|209724918|gb|BW669607.1|BW669607
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|31468248|gb|CD410276.1|CD410276
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGG AAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCEST: gi|193397507|gb|FK361525.1|FK361525
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCC
EST: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGATTGG AAGAATGCCATGATTGGGGGTGC
genomic: ATGTTGGAATGGAATATGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGgtaattctct ... tgtactgcagAAGAATGCCATGATTGGGGGTGC
attcttactcaacctttttttttgttttcttgaacttggattggatgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCAGCAACAACAAGAAAGACAAGATTGCGATAGATGCCATTACTGGGGCAG
ttcttac putative branch site (score: 2)
tttttttttgttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaccatgctttttattttgcaattgtaattttatttttacttgaattcttactcaacctttttttttgttttcttgaacttggattggatgtactgcagAAGAATGCCATGATTGGGGGTGCAGTAACTGGGGCCCTGGTATCTGCAGCCAGCAACAACAAGAAAGACAAGATTGCGATAGATGCCATTACTGGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -ccatgct
- - - - - - - -ttttgca