Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG

Basic information

species Glycine max
transcript GLYMA15G04290.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g62420.3 (Oryza sativa), 3'ss of exon 5
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG
                                                                             |||||   | | ||||          |   | |     ||   ||  ||  | |  | || ||  |||     | ||| |      |||   ||||  ||   | || || |     |||  || |||||  |||||  |||||| |||||||| || || |||||||||||||||||||| || |||||||| || |||||||||||||| ||||||| 
-----------------------------------------------------------------------------tctttatggcttttgt-----ggtccattgtactgtgctgacatagaag--tcttctcatttctccacccctaacttttt-----gtct---tttttactcgtcatattttt-----cagAGAAGATATCCGATTGGACCAATGTTGTTTTGGCATATGAACCAGTTTGGGCCATTGGAACCGGCAAGGTTGCAACCCCTGCTCAGGCTCAGGAGGTATT

upper sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g62420.5 (Oryza sativa), 3'ss of exon 4
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG
                                                                             |||||   | | ||||          |   | |     ||   ||  ||  | |  | || ||  |||     | ||| |      |||   ||||  ||   | || || |     |||  || |||||  |||||  |||||| |||||||| || || |||||||||||||||||||| || |||||||| || |||||||||||||| |||     
-----------------------------------------------------------------------------tctttatggcttttgt-----ggtccattgtactgtgctgacatagaag--tcttctcatttctccacccctaacttttt-----gtct---tttttactcgtcatattttt-----cagAGAAGATATCCGATTGGACCAATGTTGTTTTGGCATATGAACCAGTTTGGGCCATTGGAACCGGCAAGGTTGCAACCCCTGCTCAGGCTCAGGAG-----

upper sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 5
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG
                                                                              | ||   | |  || ||  ||            | ||| ||| |       || |    ||  | |      ||||   ||     || | |  |  ||  ||||  |||| |||||||  ||||||||| |||||   ||| | || ||||| || || ||||||||||| ||||| || || || ||||| ||||||||||||||||| |||     
------------------------------------------------------------------------------cattctagctgctgctttgaa----------ttttattccttcacgcagaaatgagggacttctga------atttctctaattcactgtttactgcctctcctt--ttgt-tttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG-----

upper sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g04800.t01 (Vitis vinifera), 3'ss of exon 5
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgc-tattttgttagca-atctatattttcgctgacct--taattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG
                                                                                                    | |  ||||  ||||||   |  || ||     || |||       ||  |  | | | | |  || | | |  |   | |  |  || ||    || |||  ||| | ||||  ||||| ||| | |||||||| || || || |||||||||||||| || ||||||||||| || ||||||||||| || ||      
--------------------------------------------------------------------------------------------------ctacatgaatttgtaattg---tgccatatcccttttttctagctgtatgtgttctctatgaacggatatgtttgatgaataatttgctattttctctttcagAAAAAGTGTCAAGCTGGGATAATATTGTTTTGGCTTATGAACCTGTTTGGGCCATTGGCACTGGAAAGGTTGCAACCCCTGCTCAGGCACAGGAA-----

upper sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ37925 (Selaginella moellendorffii), 3'ss of exon 5
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttg-cagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG
                                                                                                                                  |     | ||||   ||  | ||   |    ||   | |     ||  | ||   |||| | || |||  ||  |     | ||| | ||||| ||  | || ||||||||||| ||||| |||||||||||||| ||||| || ||||| ||||| || |||||   
---------------------------------------------------------------------------------------------------------------------------------gtttgggtttcatgtttttatcttgcatccaaaacacacacccaagcataactc--ttgtttgtgacagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA

upper sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 5
lower sequence: EFJ31929 (Selaginella moellendorffii), 3'ss of exon 5
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgac--cttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG
                                                                                                                                  |     | ||||   ||  | ||   |    |    | | |   ||  ||  ||| |||||    ||||  ||  |     | ||| | ||||| ||  | || ||||||||||| ||||| |||||||||||||| ||||| || ||||| |||||||| |||||   
---------------------------------------------------------------------------------------------------------------------------------gtttgggtttcatgtttttatcttgcatccaaagctcacactcaagcatacttcttgattgtg---gcagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCTCAGGAGGTCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208286584|gb|GE088672.1|GE088672
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|151402600|gb|EV272413.1|EV272413
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|298172150|gb|HO021742.1|HO021742
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGT
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGT
EST: gi|192330567|gb|FK022698.1|FK022698
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|193593373|gb|FK547501.1|FK547501
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|209714947|gb|BW650793.1|BW650793
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|208339967|gb|GE134031.1|GE134031
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|33388216|gb|CA851423.1|CA851423
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|17020677|gb|BM091711.1|BM091711
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTTTGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGG
EST: gi|208328350|gb|GE130096.1|GE130096
EST:     AGCTGGCACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|19935084|gb|BQ080114.1|BQ080114
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|6455637|gb|AW186320.1|AW186320
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAGATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTGTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|208230380|gb|GE032163.1|GE032163
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|15203172|gb|BI425940.1|BI425940
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCCTTTTGGCCTAC
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTAC
EST: gi|208285272|gb|GE086030.1|GE086030
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAAATATCAAATTGGGAC
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAA-TATCAAATTGGGAC
EST: gi|298197518|gb|HO044997.1|HO044997
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGG
EST: gi|16997158|gb|BM086530.1|BM086530
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGT
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGT
EST: gi|298195199|gb|HO043727.1|HO043727
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGT
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGT
EST: gi|193698321|gb|FK641520.1|FK641520
EST:     AGCTGGTACAACTACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAAATATCAAATTGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAA-TATCAAATTGG
EST: gi|207830130|gb|GD801486.1|GD801486
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|16346985|gb|BI972580.1|BI972580
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACGAGCCA
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCA
EST: gi|208176812|gb|GD975239.1|GD975239
EST:     AGCTGGCACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|18735370|gb|BM528727.1|BM528727
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|7145629|gb|AW507551.1|AW507551
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAGATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|208327440|gb|GE125420.1|GE125420
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAA-GCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|192325300|gb|FK019156.1|FK019156
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|9259762|gb|BE347909.1|BE347909
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTT-GGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|298165322|gb|HO011371.1|HO011371
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGT
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGT
EST: gi|209699025|gb|BW664305.1|BW664305
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|16996754|gb|BM086126.1|BM086126
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|7283679|gb|AW596283.1|AW596283
EST:     AGCTGGTACAACAACGGCTGTTGTGTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAAT
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAAT
EST: gi|193357712|gb|FK318892.1|FK318892
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|209714152|gb|BW679481.1|BW679481
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAANATATCAAATTGGGACAATGTC
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTC
EST: gi|8282599|gb|BE020160.1|BE020160
EST:     AGCTGGTACAACAACGGGTGTTGGTTCTGAACAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTTTTGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|21637796|gb|BM107951.1|BM107951
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACG
EST: gi|208031824|gb|GD831290.1|GD831290
EST:     CGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAGATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTT
genomic: CGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTT
EST: gi|208172200|gb|GD970651.1|GD970651
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         A
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcag-
EST: gi|208172200|gb|GD970651.1|GD970651
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         A
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcag-
EST: gi|208248737|gb|GE044150.1|GE044150
EST:     TTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATAATCAAATTGGGAC
genomic: TTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATA-TCAAATTGGGAC
EST: gi|193660216|gb|FK604736.1|FK604736
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|7589997|gb|AW705759.1|AW705759
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAANATATCAAATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|207793408|gb|GD767526.1|GD767526
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|254316953|gb|GR828490.1|GR828490
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|24136837|gb|BU927347.1|BU927347
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|209700974|gb|BW664155.1|BW664155
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAA-GCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|193463111|gb|FK429556.1|FK429556
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|18735501|gb|BM528799.1|BM528799
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGGGACAATGTTGTTTTGGCCTACCAGCCATTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|213601422|gb|DB968724.1|DB968724
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAANATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG
EST: gi|18735273|gb|BM528669.1|BM528669
EST:     AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAG                         CTAAAATATCAAATTGNGACAATGTTGTTTTGGCCTACGAGCCAGTTTGGG
genomic: AGCTGGTACAACAACGGCTGTTGTTTCTGAGCAAACAAAAGCAATTGCAGgtaccttttt ... gtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttgctattttgttagcaatctatattttcgctgaccttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG
                   aatctatatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG