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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgctctttcattatgtactttgcatccgtacaggccaggttgaattaaattatgtggctgggttgaaaggaattgtatgattttgttgccaaatctgtagatgatttaaggagattgttacacgatgtttttcctatgtctaagttggttttgatattgatattttctgctgtagTCAACCCAAATAGGAAACCAACTCAACATAACATGCCTGAGCAATGGGAGAAGTGACATGTTTCCTCTTTCAAATACTAGCACTTCGGAGGCTCAACAAC

Basic information

species Glycine max
transcript GLYMA15G04230.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04230.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g04890.t01 (Vitis vinifera), 3'ss of exon 5
gtgagtgctctttcattatgtactttgcatccgtacaggccaggttgaattaaattatgtggctgggttgaaaggaattgtatga-ttttgttgccaaatct-gtagatgatttaaggagattgttacacgatgtttttcc-tatgtctaagttggttttgatattgatattttctgctgtagTCAACCCAAATAGGAAACCAACTCAACATAACATGCCTGAGCAATGGGAGAAGTGACATGTTTCCTCTTTCAAATACTAGCACTTCGGAGGCTCAACAAC
                                                                             ||  |||| ||||  |||    |||   |||| |  |||  | |         ||| |   ||  | ||| ||| |  ||||  |     | ||  | |||   |||| |||  ||| |||||||| || ||| | |||||||||||||||||||||||  |||| | |    |  |  ||   | ||||||  ||| ||| || |
-----------------------------------------------------------------------gtctgcttaaatgagtttttctgctgggtctcacagataacataacaaaa---------gatctcagtctgtgtgtttaactaagtttgtacccaaaaatgctttgc---agTCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGAAGCAACATTTATTTATTGCCTGATGACAACACTTCCCAGGTTCAGCAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacgatgtttttcctatgtctaagttggttttgatattgatattttctgctgtagTCAACCCAAATAGGAAACCAACTCAACATAACATGCCTGAGCAATGGGAGAAGTGACATGTTTCCTCTTTCAAATACTAGCACTTCGGAGGCTCAACAAC
                                  tattgat  putative branch site (score: 3)
                                          ttttctgct  CT-rich tract
                            ttttgatattgatatt  TA-rich tract