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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcattatttgtctggttgcaacaatttgattcattctttgtcctgctaaattactaggcttattcatctaaacatctatcaagatttttactagttaagtttttcagCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGG

Basic information

species Glycine max
transcript GLYMA15G04140.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209707768|gb|BW683660.1|BW683660
EST:     TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG                         CGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
genomic: TTATCATGCCTCCCTCAGCCCTTGATCGCCTTGgtaagtcatt ... agtttttcagCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
EST: gi|298175906|gb|HO015311.1|HO015311
EST:     TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG                         CGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
genomic: TTATCATGCCTCCCTCAGCCCTTGATCGCCTTGgtaagtcatt ... agtttttcagCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
EST: gi|37993996|gb|CF805742.1|CF805742
EST:     TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG                         CGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
genomic: TTATCATGCCTCCCTCAGCCCTTGATCGCCTTGgtaagtcatt ... agtttttcagCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
EST: gi|16349341|gb|BI974936.1|BI974936
EST:     TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG                         CGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
genomic: TTATCATGCCTCCCTCAGCCCTTGATCGCCTTGgtaagtcatt ... agtttttcagCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
EST: gi|120533678|gb|EH261811.1|EH261811
EST:     TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG                         CGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
genomic: TTATCATGCCTCCCTCAGCCCTTGATCGCCTTGgtaagtcatt ... agtttttcagCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
EST: gi|15664016|gb|BI701387.1|BI701387
EST:     TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG                         CGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
genomic: TTATCATGCCTCCCTCAGCCCTTGATCGCCTTGgtaagtcatt ... agtttttcagCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTG
EST: gi|213611480|gb|DB972797.1|DB972797
EST:     TTATCATGCCTCCCTCAGCCCTTGATCGCCTTG                         CGTCTTTGCAC
genomic: TTATCATGCCTCCCTCAGCCCTTGATCGCCTTGgtaagtcatt ... agtttttcagCGTCTTTGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaggcttattcatctaaacatctatcaagatttttactagttaagtttttcagCGTCTTTGCACATAGAGTACCCCATGTTATTTCAAATTAAAAATCCTTCTGCTGAAAGAGTTACTCACTGTGGGGTGCTAGAATTCGTATCTGATGAAGG
             atctaaa  putative branch site (score: 3)
                                               tttttc  putative PPT
                               atttttactagttaag  TA-rich tract