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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcattacccattctctatattgcctatgcatgctcaaatgattctcttttatggatcttgttagcgtgacaattggtatctggcagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTTTTTGAACATGTTCTGACGCTTAGCCTTCAAATGTATGGTTGTCGGGTCA

Basic information

species Glycine max
transcript GLYMA15G04060.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04060.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------gtaatcattacccattctctatat-tgcctatgcatgctcaaatgattctcttt-------tatggatcttgttagcgtgacaattg-----gtatctgg----cagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTTTTTGAACATGTTCTGACGCTTAGCCTTCAAATGTATGGTTGTCGGGTCA
                        | ||  || |     | |||||| ||  | |   ||| || || ||| |  ||       |||   | |   | |  | ||| |||     || |||      |||||||||||||||||||| | |||||||||||||||  | ||   |||||||| ||  ||||| ||||| |||||||||||||||||||||||||| || |
gtatgaaattctcttttcgttgcatgattcttgcatgcgcgctatatgtgtgtgtatctgcacacattattattattattattatataattttaaatggttttacatttgcaactgtttctaattttcagTTTTTTGAGCATGGACTAGTATCCCAGAGAAGAGAACTGGCTGGCAAGCTTTATGGTCATGTACTGACACTTAGCCTTCAAATGTATGGTTGTCGAGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcaaatgattctcttttatggatcttgttagcgtgacaattggtatctggcagTTTTTTGAGCATGGACTTGCATCCCAGAGAAGAGAGTTAGCCAACAAGCTTTTTGAACATGTTCTGACGCTTAGCCTTCAAATGTATGGTTGTCGGGTCA
             tcttttat  TA-rich tract