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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccttgacaaacttaaattttcattgatctaatgtcacaatatcctgctattatttgattctaggtactctttctttgatgtatctagTGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCA

Basic information

species Glycine max
transcript GLYMA15G03930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03930.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 3'ss of exon 5
---------gtatgccttgacaaacttaaattttcattgatctaatgtcacaatatcctgctattatttgattcta--ggtactctttctttgatgtatctagTGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCA
         ||||   |  |   |    |  || |  | |   |||         ||  | || ||  |    |||  |||  |   |||||  | || | |||||| ||||||| |||||||||||   | |||||  |||| |||||||| ||||  |  ||||||||||||||||| || || ||||||||||| ||
ttgtagatggtatatttaaatgcatgagatgttacgattagtgaataatttgcc-tcaggataatacatatacctaatggtgttaactctttt-tatacc-agTGGCTGGAGATGCAACCAACATAGTTTTGGATCCAATATTTATGTTTGTCTTCCAGTATGGTGTCAGTGGTGCAGCAATTGCTCATGTTATATCACA

upper sequence: GLYMA15G03930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g02140.t01 (Vitis vinifera), 3'ss of exon 5
------------------gtatgccttgacaaacttaaattttcattgatctaatgtcacaatatcctgctattatttgattctaggt-actctttctttgatgta-tctagTGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCA
                    ||| | | | ||    |||| ||||    |||  | |    |  |     | |   |||| ||||    | | |||   || | || |  |||||||||||| ||||| ||||||    |||| ||  |||| |||||||| ||||   |||||||| ||||||||||||| |||||||||||||||||
gtaagtagagagaggatgaaatgtcgt-ataagaacaaatattcaacc-tcttgtatatggagctgagattttcgcttgactctaatccattgtttacctggtctaattcagTGGCAGGAGACGTAACAAACATAATTTTAGACCCGATATTTATGTTTGTTTTCCATATGGGTGTCGGTGGTGCAGCCATTGCCCATGTTATATCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcacaatatcctgctattatttgattctaggtactctttctttgatgtatctagTGGCAGGAGATGTAACCAACATAGCACTAGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATCGCCCATGTTATATCTCA
                                        ctttgat  putative branch site (score: 5)
               tattatttgattcta  TA-rich tract