Sequence
atgc intronic sequence ATGC exonic sequencegtgaattgctttatgtatgctgtagattactggtactgaaatttgttgttattattttaaattccgataatggttcttgaatttggtttttggtgtgttagGAAATAGGAACACTCTTTATGGATCTTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTCAACGAATTTTG
Basic information
species | Glycine max |
transcript | GLYMA15G03770.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g01650.t01 (Vitis vinifera), 3'ss of exon 5
gtgaattgctttatgtatgctgtagattactggtactgaaatttgttgttattattttaaattccgataatggttcttgaatt-tggtttt------tggtgtgttagGAAATAGGAACACTCTTTATGGATCTTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTCAACGAATTTTG
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gtaaattgctgtggataaattctggacagtcttgactgcaatc-gtcaacaaagacaaagatgtttgtgcctgatcacaagttattgttctataatattgtgtgacagACAATAGGAGCATTCTTCATAGACACTGTTAACTCCTCTCATAGCTATGCAACTGGAGGGACATCGGTCGATGAGTTCTG
upper sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 5
gtgaattgctttatgtatgctgtagattactggtactgaaatttgttgttattattttaaattccgataatggttcttgaatttggtttttg---gtgtgttagGAAATAGGAACACTCTTTATGGATCTTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTCAACGAATTTTG
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-tgattaattaattgtataacttctgtt-tgaaaatttgaatgtgtaatt--catcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttattattttaaattccgataatggttcttgaatttggtttttggtgtgttagGAAATAGGAACACTCTTTATGGATCTTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTCAACGAATTTTG
ttattttaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaattgctttatgtatgctgtagattactggtactgaaatttgttgttattattttaaattccgataatggttcttgaatttggtttttggtgtgttagGAAATAGGAACACTCTTTATGGATCTTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTCAACGAATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG