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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttcagaagtatattttccattttttttttcctaatttcaatttttacacaaaatgtccattttggtttacattgttttttccccggtatttttaaagGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTAAAAAGCACATTCAATGAGGACCTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACA

Basic information

species Glycine max
transcript GLYMA15G03190.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03190.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g27950.1 (Oryza sativa), 3'ss of exon 5
-tttttcagaagtatattttcca---ttttttttttcctaatttcaatttttacacaaaatgtccattttggtttacattgttttttccccggtatttttaaagGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTAAAAAGCACATTCAATGAGGACCTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACA
 |  ||   || | |   ||  |   |  |   |   ||      ||| || | | |  ||   ||| || |  |  | | ||  |       |||  |   ||| | ||||| ||||||||||||||||  || |||||||| ||||| || || |||||||| || |||||||| |||||||| || | ||| ||||| |  
atccttggaaatttttgcttgtaaagtactagctcctctggggataatgttcatatattata--catgttagcatg-actattaataatt-aatatggtgctagGAGCTGGGACCAGTTTGAAACAAATGCAGCTTTGTTTGGGGTAAAGAGTACTTTCAATGAAGAACTTTATACCACAAAGCTAGAGAGAGGTCCTCACATG

upper sequence: GLYMA15G03190.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G056773_T01 (Zea mays), 3'ss of exon 5
-------tttttcagaagtatattttccattttttttttcctaatttcaatttttacacaaaatgtccattttggtttacattgttttttccccggtatttttaaagGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTAAAAAGCACATTCAATGAGGACCTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACA
         || ||    || |  | |   |      |  || |  | |   ||| |      ||| ||     |  | |||  | |      |  ||  |||  ||| | ||||||||||| ||||| ||||  || |||||||| ||||| || ||||||||||| ||  ||||||| ||||||||||| | ||| ||||| |  
cctaagtgcttgcatcgatagaactactgctgaaacatctctgacatta---tttgctttggttgtacac----ggctgcatgatataacaatccatagatttgcagGAGCTGGGATCAGTTCGAAACCAATGCAGCCTTGTTTGGGGTAAAGAGTACATTCAATGAAGAAATTTATACCACAAAGCTTGAGAGAGGTCCTCATATG

upper sequence: GLYMA15G03190.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM5G829738_T01 (Zea mays), 3'ss of exon 5
tttttcagaagtatattttccattttttttttcctaatttcaatttttacacaaaatgtccattttggtt--tacattgttttttccccggtatttttaaagGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTAAAAAGCACATTCAATGAGGACCTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACA
 |     ||| ||   ||   |  | |       || || |  |  ||  ||||    | |||  |  ||  || ||  |  |     |  ||  |||  ||| | ||||| ||||||||||| ||||  ||||| ||||| ||||| || || |||||||| ||  ||||||| ||||||||||| | ||| ||||| |  
-tcaatggaaatagtgttggaacatctgaaacattatttcctttggttgtacaaggc-ttcatgataattagtaaatattaatccattccatacatttgcagGAGCTGGGACCAGTTTGAAACCAATGCAGCATTATTTGGGGTAAAGAGTACTTTCAATGAAGAAATTTATACCACAAAGCTTGAGAGAGGTCCTCACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttacacaaaatgtccattttggtttacattgttttttccccggtatttttaaagGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTAAAAAGCACATTCAATGAGGACCTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACA
                                            tattttt  CT-rich tract
                       tttacattgtttttt  TA-rich tract