1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttttacattttttgtgtcaaaactaagaccttgatttcaccaatgtaatttatgggaaaacaacagtgatttgaatgtctggcagGTATATTTTGATTCAGAGGAAGTACACGCTTGTATTGTCACGTGCGGTGGACTTTGTCCTGGTCTAAATACAGTGATAAGAGAAATAGTATGCGGCTTAT
species | Glycine max |
transcript | GLYMA15G02400.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAAATAGTCCAAGAGGGACCCATTTTCGTCGTGCTGGGCCTGCTCAGAAG GTATATTTTGATTCAGAGGAAGTACACGCTTGTATTGTCACGTGCGGTGGAEST: gi|13789748|gb|BG652339.1|BG652339
genomic: AAAATAGTCCAAGAGGGACCCATTTTCGTCGTGCTGGGCCTGCTCAGAAGgttttacatt ... tgtctggcagGTATATTTTGATTCAGAGGAAGTACACGCTTGTATTGTCACGTGCGGTGGA
EST: AAAATAGTCCAAGAGGGACCCATTTTCGTCGTGCTGGGCCTGCTCAGAAG GTATATTTTGATTCAGAGGAAGTACACGCTTGTATTGTCACGTGCGGTGGA
genomic: AAAATAGTCCAAGAGGGACCCATTTTCGTCGTGCTGGGCCTGCTCAGAAGgttttacatt ... tgtctggcagGTATATTTTGATTCAGAGGAAGTACACGCTTGTATTGTCACGTGCGGTGGA
ttgatttcaccaatgtaatttatgggaaaacaacagtgatttgaatgtctggcagGTATATTTTGATTCAGAGGAAGTACACGCTTGTATTGTCACGTGCGGTGGACTTTGTCCTGGTCTAAATACAGTGATAAGAGAAATAGTATGCGGCTTAT
ccttgat putative branch site (score: 5)
aatgtaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttacattttttgtgtcaaaactaagaccttgatttcaccaatgtaatttatgggaaaacaacagtgatttgaatgtctggcagGTATATTTTGATTCAGAGGAAGTACACGCTTGTATTGTCACGTGCGGTGGACTTTGTCCTGGTCTAAATACAGTGATAAGAGAAATAGTATGCGGCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA