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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgtttctcacacattatttatactaagctattcagagtcagtgaaagcatgcacttaaagtttgaccaatatttattgatgatgcttttctccaaaaacattcttcagttatgggagttataaaattttattcctttttctcctccttgaatggatgcagGCACTCAGCTCTCCTTACTTGGGCAGTGCATCAAAAAACATGAGGAATCAACAGTCT

Basic information

species Glycine max
transcript GLYMA15G02020.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02020.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g04120.t01 (Vitis vinifera), 3'ss of exon 5
gtgatgtttct------cacacattatttat--------actaagctattcagagtcagtgaaagcatgcacttaaagtttgaccaatatttattgatgatgcttttctccaaaaacattcttcagttatgggagttataaaattttattcctttt---tctcctccttgaatggatgcagGCACTCAGCTCTCCTTACTTGGGCAGTGCATCAAAAAACATGAGGAATCAACAGTCT
|||||||||        ||||  ||||   |        || |||   | | | |  |  || ||||||||| ||||||||       ||||||| |||   |||||||     ||||||||  |||||| | |||||||||||||  |   ||||   |||   ||     || |||||||| || |||||||| |||||||||| |||||||  |||||||||||| ||||||| |
gtgatgttttcttccaccacattttatgctttgcaaacgaccaagtattccggtgggaaagagagcatgcacctaaagttt------catttattcatg---cttttct----gaacattctgtagttattgaagttataaaatttattcttttttcaatctttcccccccttgaatgcagGCCCTTAGCTCTCCGTACTTGGGCAATGCATCAGGAAACATGAGGAACCAACAGTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttatgggagttataaaattttattcctttttctcctccttgaatggatgcagGCACTCAGCTCTCCTTACTTGGGCAGTGCATCAAAAAACATGAGGAATCAACAGTCT
                    ttttattcctttttct  CT-rich tract
          agttataaaattttat  TA-rich tract