Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA

Basic information

species Glycine max
transcript GLYMA15G01680.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G124886_T04 (Zea mays), 3'ss of exon 5
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
                                                                  | |  | |||    |||| | | |     | ||  |  |   || | | |||       | || | | ||| ||| |  | ||| ||||| | ||||| || ||||||||||| || || |||||||||||||| || ||||||||||| |||||||| || || || ||||||||||| || |||||
------------------------------------------------------------------gtatgctcacccaactttctgtgt-----gcttcttgtccgtgaggtttact-------tcatgctaatattcaataacaattt-cagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGATGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA

upper sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G141587_T01 (Zea mays), 3'ss of exon 5
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
                                                              |  || | |  || ||||||  |  |  |||     |  |  |||||  | | ||        | || |   ||| | | |  | ||| ||||| | ||||| || ||||||||||| || || |||||||||||||| || || |||||||| |||||||| || || || ||||||||||| || |||||
--------------------------------------------------------------gtatgcacaaccaattttct--gcttgcttc-----tcttcccttag--gtttaca-------tcatgctgatattccataacaattt-cagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGACGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA

upper sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 6
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgatt-ttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
                                             |   |||      |    ||  || |  | | || || | || | ||     ||   ||   |   |     | | ||  |||| |   | || | |||| |  |||||||| | ||||| || ||||||||||  || || |||||||||||||| || ||||| ||||| |||||||| ||||| || || || |||||||| |||||
---------------------------------------------tgagtctaagaaga----ctcaaacaagcccattactgtctacagtt-----ttctgtatgcatttgtgtttttgtgcaattatgctcatgta-accatgttaattgcagTTCGTTCGGCTAAATTTATTGCACAGAAGCAATGGGTTGTTGCTGGTGCCGATGACATGTTCATCCGTGTGTATAACTATAATACCATGGATAAGGTCAA

upper sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 5
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
                      | |    | ||||||  | |   |  || ||| |  |||   || |||      ||||  |||||| |   | |   || |   |||    | |||     | || | |   | || |  |||| ||||||||| | || ||||||||| | ||||| || || |||||||| || ||||| |||||||||| |||||||||||| ||||||||||| ||||| || || ||
---------------------gtatacggcttttgttcttttg--tgtcttttgttatatt--gttcaag------tttttgttgtatgtactaagtactcgtgtctagtttgttact-----tattctgcttttttatattatgactttgcagTTCGGTCAGCCAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTGATGATATGTATATCCGTGTATACAATTACAACACCATGGACAAGGTTAA

upper sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 5
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
                                      ||||| | |  |  ||| |||| |   |||   ||   || |   | | |   |     | | || | | | | |   |||  ||| |||   || | || |  |||| ||||||||||| ||||||||||||||| | ||||| || |||||||| |||||||| ||||||||||  ||||||||||| |||||||| |||||||| || |||||
--------------------------------------gtataacaagtttatga-gcatct-tctgatttcattgttatagatttttcacttgctgtatattgccttgtatagt-ctgtcgctgttactgaaatttata-tatgactttgcagTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGGATGATATGTACATCCGTGTATACAATTACAATACAATGGACAAGGTCAA

upper sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 9
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
                                                              |  |||       | | || |||| |  ||| |   ||||| |  | |  ||   | ||     | | |  || |          | ||||||| | || || ||||| |||||||| || ||||||||||| |||||||| ||||| |||||||| ||||| || || |||||||| ||||||||  ||||
--------------------------------------------------------------gtatgatatatagcatctcattgt-tccttctta--ttctttcgcacatcatttgttgaatctctgtcctggtgt----------tgtgcagTTCGGTCAGCAAAGTTCATTGCACGGAAGCAGTGGGTTGTAGCTGGAGCTGATGACATGTTTATTCGTGTCTACAACTACAACACTATGGATAAGATCAA

upper sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
             || || |    |  |  || |||||  ||||   |   ||| ||   |||  |         |  || ||  |  |||||    | ||||| |   ||| | | |  |  | |    ||| | ||||  || ||  ||||||||| || || |||||||| |||||||| || ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || ||
----------gtatgtacat---gtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttc----tctcttattggtaaggttattacatgttt----caattttacattatcat--tgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA

upper sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 5
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
                                                                        |   | ||| |   ||   |  | ||||||    |    |  || |||   | | ||  |  | ||   |||    |||||||  | || || || ||||| || || || |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||| || | 
----------------------------------------------------------------------gtatgttattcat-acatgacttttaatttctccagtcttgg--ca-tggtaatttcatttacatctaaggcatctgcttgcagTCCGGTCAGCAAAATTTATAGCTCGTAAGCAGTGGGTGGTTGCTGGAGCTGATGACATGTTTATCCGTGTATACAATTACAATACTATGGATAAGGTTAC

upper sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 3'ss of exon 5
gtacttgaagacgtgaaccttttttggtccatttgtttgtatatctacctcttgatgcatttgcttgaagacacacttttctttgtatatttcatgatttcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
              | |   ||| | |  || |||     | | ||   | ||  |  |||    |||||   |   | |   |  |  |||     || |||||   ||  ||  |  | |||  |   ||| | |      | || | |||||  |||| || ||||||||    || || |||||| ||||  |||| || ||||| ||||| ||||| || |||||||||||||||||||| ||||| ||
--------------gtatactttattgatcacttg-----aaagctttatttttgtagattca--tgaagctgcggatctgcgtaaactttt-----ttgcttaccacgagaatttc--gtgctgatgctcaattcttt---cttatatggcagTGCGATCTGCGAAGTTTATATTTCGGAAGCAGTGGATTGTGACTGGTGCGGATGACATGTTCATCCGAGTCTATAATTACAACACAATGGACAAAGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttacttagaagatcactggagctcttatacaagtatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATCCGTGTATATAATTACAACACAATGGATAAAGTCAA
 ttcttac  putative branch site (score: 2)
                          ttatacaa  TA-rich tract