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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtcaaccaactctctgctttctattttattttatactacttcacttcacctcggatactttttatttcagGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTATGGATATGTGTTATATGTGGGTATGTTGGCT

Basic information

species Glycine max
transcript GLYMA15G00770.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00770.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0125g00250.t01 (Vitis vinifera), 3'ss of exon 5
-------gtaagtgtcaaccaactctctgctttctatttta--------tttt-----atactacttcac--ttcacctcggat--actttttatttcagGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTATGGATATGTGTTATATGTGGGTATGTTGGCT
         || |||       |    || | |||||| ||        ||||     |   ||||| |    |||| | |  |  || ||||||||||||||||| | || |||||||||||  ||||||||||  ||||| |||||||||||||  ||||||| || ||||| |||||| | || || | |||||| |
ttggtataaaaatgttgtgttgcctgttgttgtctattctaaaggaaaattttcagggaaggtacttgagagctcacttggtttctacattttatttcagGTATGCAGATACTGCCAGCAGCAGCCTGAAAAATCAGTATGTATTGTTTGTCAAACTTCTGAGAATCTCTGGATTTGTGTTCTTTGCGGTTTTGTTGGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136317|gb|BU926827.1|BU926827
EST:     ATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCT                         GTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGT
genomic: ATTCTTTCCATTGTTCCTGTATTTCTAAATGGGCAGATTCTTCTTGTCCTgtaagtgtca ... tttatttcagGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttctattttattttatactacttcacttcacctcggatactttttatttcagGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTATGGATATGTGTTATATGTGGGTATGTTGGCT
                                          ctttttatttc  CT-rich tract
      tattttattttatact  TA-rich tract