1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctctacttctgacaattttatcctgggtttaaatttatttatgagctaaattttaggccatagaaaacctcaaataacaaatctgtttttgtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTAGTTTTCTGCTGTCATATTGATTTGGAGATTTCGATGATTTACTCATGC
species | Glycine max |
transcript | GLYMA14G40430.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAG GCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTEST: gi|58022169|gb|CX708910.1|CX708910
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... gtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGTAG GCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTEST: gi|298170111|gb|HO018735.1|HO018735
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... gtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAG GCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTEST: gi|33388323|gb|CA851530.1|CA851530
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... gtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAG GCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTEST: gi|15661937|gb|BI699308.1|BI699308
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... gtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAG GCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTEST: gi|58022417|gb|CX709158.1|CX709158
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... gtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGTAG GCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTEST: gi|33388305|gb|CA851512.1|CA851512
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... gtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAG GCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTEST: gi|9258866|gb|BE347013.1|BE347013
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... gtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAG GCTATTATTGAGAGAATGGGGGAATTGGAAAAACTAGAATGAAAAATCATTEST: gi|151399436|gb|EV269307.1|EV269307
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... gtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
EST: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAG GCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
genomic: TACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattc ... gtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATT
ctaaattttaggccatagaaaacctcaaataacaaatctgtttttgtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTAGTTTTCTGCTGTCATATTGATTTGGAGATTTCGATGATTTACTCATGC
aaataac putative branch site (score: 2)
tttttgt putative PPT
aaataacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctacttctgacaattttatcctgggtttaaatttatttatgagctaaattttaggccatagaaaacctcaaataacaaatctgtttttgtgcttgcagGCTATTATTGAGAGAATGGGGGAACTGGAAAAACTAGAATGAAAAATCATTAGTTTTCTGCTGTCATATTGATTTGGAGATTTCGATGATTTACTCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcaaa