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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctagaaatcaatattgccttatatcatcttcttttttttattattgaaatttgtcttgatgctttatgattttctccttgggtgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATGCAAGGATTCTGTAAACTTAGATGTAGTCATTGACTGGCTAATCAAACAC

Basic information

species Glycine max
transcript GLYMA14G39540.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208037603|gb|GD833601.1|GD833601
EST:     AAAATTGACAAGTCAGAAGCTCTTTCTAAGCAAGCATTGGTAGATCAGCT                         AGGACTTGAGTCAATTAAAGA
genomic: AAAATTGACAAGTCAGAAGCTCTTTCTAAGCAAGCATTGGTAGATCAGCTgtgagttcta ... gtgatttcagAGGACTTGAGTCAATTAAAGA
EST: gi|7588810|gb|AW704597.1|AW704597
EST:     AAAATTGACAAGTCAGAAGCTCTTTCTAAGCAAGCATTGGTAGATCAGCT                         AGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATG
genomic: AAAATTGACAAGTCAGAAGCTCTTTCTAAGCAAGCATTGGTAGATCAGCTgtgagttcta ... gtgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATG
EST: gi|7588811|gb|AW704598.1|AW704598
EST:     AAAATTGACAAGTCAGAAGCTCTTTCTAAGCAAGCATTGGTAGATCAGCT                         AGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATG
genomic: AAAATTGACAAGTCAGAAGCTCTTTCTAAGCAAGCATTGGTAGATCAGCTgtgagttcta ... gtgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattattgaaatttgtcttgatgctttatgattttctccttgggtgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATGCAAGGATTCTGTAAACTTAGATGTAGTCATTGACTGGCTAATCAAACAC
                 tcttgat  putative branch site (score: 4)
     tattgaaattt  TA-rich tract