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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctgttgttcagaattccatttaccttcatgtacttttcttaccattacttatgacattaattacatatatagGTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGGCATTGCATTGTTCTTCGGGTGGTTG

Basic information

species Glycine max
transcript GLYMA14G38830.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G38830.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 3'ss of exon 6
gtaaatctgttgttcagaattccatttaccttcatgtacttttcttaccattacttatgacattaattacatatatagGTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGGCATTGCATTGTTCTTCGGGTGGTTG
|||||         || || | | || |   | || |  || ||  ||  | | | ||    | ||| || | |  ||| |||||||||||||||| || ||||| || || || ||||| || |||||||| ||| ||||||| |||||||||
gtaaagtcagcac-cacaagttctttcaatgtaat-tggttgtca-acagtgagtgattttgtaaat-acttctgcagGCACTTGGATGTTGCTGGTCTGAAGAGTTCAAACCTATACATCTGCAATGGCATCGCACTGTTCTTTGGGTGGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31461715|gb|CD403743.1|CD403743
EST:     CTTATGGTTCTTTTCTCTGAGAGCACTACTCCTTTTGTAAATCTTAGATG                         GTACTTGGATGTTGCTGGCCTTAAGAGCTCCGAACTTTACATTTGGAATGG
genomic: CTTATGGTTCTTTTCTCTGAGAGCACTACTCCTTTTGTAAATCTTAGATGgtaaatctgt ... acatatatagGTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGG
EST: gi|209697846|gb|BW663928.1|BW663928
EST:     CTTATGGTTCTTTTCTCTGAGAGCACTACTCCTTTTGTAAATCTTAGATG                         GTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGG
genomic: CTTATGGTTCTTTTCTCTGAGAGCACTACTCCTTTTGTAAATCTTAGATGgtaaatctgt ... acatatatagGTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGG
EST: gi|213588943|gb|DB984414.1|DB984414
EST:     CTTATGGTTCTTTTCTCTGAGAGCCCTACTCCTTTTGTATTTCTTAGATG                         GTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAAT-T
genomic: CTTATGGTTCTTTTCTCTGAGAGCACTACTCCTTTTGTAAATCTTAGATGgtaaatctgt ... acatatatagGTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGG
EST: gi|209697845|gb|BW663929.1|BW663929
EST:     CTTATGGTTCTTTTCTCTGAGAGCACTACTCCTTTTGTAAATCTTAGATG                         GTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGG
genomic: CTTATGGTTCTTTTCTCTGAGAGCACTACTCCTTTTGTAAATCTTAGATGgtaaatctgt ... acatatatagGTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaccttcatgtacttttcttaccattacttatgacattaattacatatatagGTACTTGGATGTTGCTGGCCTTAAGAGCTCCAAACTTTACATTTGGAATGGCATTGCATTGTTCTTCGGGTGGTTG
                          attacttatgacatta  TA-rich tract