Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatttagaatctggttaacattttttgaatatttcaattctccaattaaaaatttgaaatagtcaccattaattatgtaattgtttgaacacgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCATCATCAGAAACTGCCTTGGTATCGCGGCAAG

Basic information

species Glycine max
transcript GLYMA14G37350.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37350.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g06730.t01 (Vitis vinifera), 3'ss of exon 6
tatatttagaatctggttaacattttttga---atatttcaattctccaattaaaaatttgaaatagtcaccattaattatgtaattgtttgaacacgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCATCATCAGAAACTGCCTTGGTATCGCGGCAAG
  |   || ||| | || | |   | ||||   |    |  | | || | |        | |  |    |  | ||||  | | |||           ||||| | || |||||||||||||||||||| || |||||||||||||||||  || | || ||||| || |||||||| ||||||
-gtgggtaaaatttagtcatctcatattgatgaactgctggaatttcaagtattttgccttatttgaaaaagactaatagtatgattccacctctgt-tgcagGTTTTCGTTATGTGGCTGGACTTTGTTACTTACTTGCATCACCATGGCTATGAGCAAAAACTTCCATGGTATCGGGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519247|gb|BM188289.1|BM188289
EST:     TCATAACTAGTCCAGTTCTATTGCTCAAGCTCTATGGAATTCCATATTGG                         ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAT
genomic: TCATAACTAGTCCAGTTCTATTGCTCAAGCTCTATGGAATTCCATATTGGgtaattaaat ... acacgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAT
EST: gi|8827170|gb|BE210900.1|BE210900
EST:     AGTTCTATTGCTCAAGCTCTATGGAATTCCATATTGG                         ATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAT
genomic: AGTTCTATTGCTCAAGCTCTATGGAATTCCATATTGGgtaattaaat ... acacgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattaaaaatttgaaatagtcaccattaattatgtaattgtttgaacacgtgcagATATTTGTTATGTGGCTGGACTTTGTCACATACTTGCATCACCATGGTCATCATCAGAAACTGCCTTGGTATCGCGGCAAG
                       cattaat  putative branch site (score: 3)
                        attaattatgtaattg  TA-rich tract