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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatataactacttgctaattattggatatgatttgtttctaaattttataacttatttgctttgctggtgatttaacatcaattgtggttatcttattagGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGTCGATTTGTCAAAGCCGGTGATGTCTATGACTAT

Basic information

species Glycine max
transcript GLYMA14G36930.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G36930.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os06g19444.2 (Oryza sativa), 3'ss of exon 4
aatataactacttgctaattattggatatgatttgtttctaaattttataacttatttgcttt------gctggtgatttaacatcaattgtgg-ttatcttattagGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGTCGATTTGTCAAAGCCGGTGATGTCTATGACTAT
   ||  |      || ||  |   | ||| | | ||||||     ||  | ||   | ||||      ||| |    ||| | |   |  ||| || ||||   || || || |||||| | |||||||| ||||||||||||||||| ||||| |||||  | || ||||| || ||||| || || ||||| |  || ||||| 
---atgtcagtccactgatgct--aacatgctatatttctag--cataccaattgcctcctttttgacagctagctgattatcttttctcatggcttctcttgacagATTTGACAAGAAAATCAGGTATGCATCTCGCAAGGCTAGGGCAGATGTGAGAAAAAGAGTCAAGGGCCGGTTTGTTAAGGCTGGTGAAGCATACGACTAC

upper sequence: GLYMA14G36930.2 (Glycine max), 3'ss of exon 5
lower sequence: AT3G07650.2 (Arabidopsis thaliana), 3'ss of exon 4
aatataactacttgctaattattggatatgatttgtttctaaattttataacttatttgctttgctggtgatttaacatcaattgtggttatctt--attagGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGTCGATTTGTCAAAGCCGGTGATGTCTATGACTAT
    ||| || | |      | || | || |  ||    | | |    | | |       ||| ||  ||   | ||      |    || |||   |  ||||| || |||| ||| |||||||| || ||||| || || |||||||| |||  |||||| ||||| |||||||||||||| ||||| |  ||||| || 
---gtaagtagtagtctgaaactgcaaat-acatgagcatcattgaagtgagtgcaggattttcctaatg---tgactctggcttcttttttctggaaacagGTTTGATAAGAGAGTGAGGTATGCTTCCCGCAAAGCAAGAGCTGATGTGAGACGGCGTGTAAAGGGGCGATTTGTCAAAGCTGGTGAAGCTTATGATTAC

upper sequence: GLYMA14G36930.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0194g00070.t01 (Vitis vinifera), 3'ss of exon 4
---aatataactacttgctaattattggatatgatttgtttctaaatttt-ataacttatttgctttgctggtgatttaacatcaattgtggttatcttattagGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGTCGATTTGTCAAAGCCGGTGATGTCTATGACTAT
   || ||||      | |  |||| | || ||||| |  |  ||||||| |||||| |       |  |  |  |||  |||||||    |   | | |  || || ||||||||| |||| |||||||||||||| || ||||| |||||||| |||||||||||||| |||||||| || || || ||||  ||||| || 
actaaaataagggtaggatttttatggaatttgattagaatgaaaattttcataactaaaaaataattttttttctttttcatcaat----gacttatgaacagATTTGAGAAGAAAATAAGATATGCCTCTCGCAAAGCAAGGGCAGATGTCAGGAAGCGTGTGAAGGGGCGATTTGTTAAGGCTGGCGATGCTTATGATTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125934|gb|BG790372.1|BG790372
EST:     AACCGCAGCAATGCTGTCATGCGCTATAAGGAAAAGAAGAAGACCCGGAA                         GTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAG
genomic: AACCGCAGCAATGCTGTCATGCGCTATAAGGAAAAGAAGAAGACCCGGAAgtacgttagt ... atcttattagGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataacttatttgctttgctggtgatttaacatcaattgtggttatcttattagGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAAGCGTGTGAAGGGTCGATTTGTCAAAGCCGGTGATGTCTATGACTAT
                                           ttatctt  CT-rich tract
                         atttaacatcaatt  TA-rich tract