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...gcttctcactttaaaattgataggaaaataagaacaggatttatttatatttggttgcatctgttggattgacataatttttttgtgaaatataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG
species | Glycine max |
transcript | GLYMA14G36540.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTCGACAAGTATGGCCCCGAGAGGCTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTEST: gi|7588536|gb|AW704259.1|AW704259
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|120533350|gb|EH261483.1|EH261483
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|298196446|gb|HO041189.1|HO041189
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGTTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|192323797|gb|FK015608.1|FK015608
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|37994649|gb|CF806308.1|CF806308
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|17400857|gb|BM177639.1|BM177639
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|21638580|gb|BM139626.1|BM139626
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|151396530|gb|EV266407.1|EV266407
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|254335254|gb|GR846751.1|GR846751
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|254340298|gb|GR858423.1|GR858423
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|254319588|gb|GR829100.1|GR829100
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTEST: gi|16996929|gb|BM086301.1|BM086301
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
EST: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAG GCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
genomic: TGCTCGACAAGTATGGCCCCGAGAGGGTTCTCGATACTCCAATCACTGAGgtaatttttc ... tataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCT
tatatttggttgcatctgttggattgacataatttttttgtgaaatataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG
gattgac putative branch site (score: 3)
attgacataatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttctcactttaaaattgataggaaaataagaacaggatttatttatatttggttgcatctgttggattgacataatttttttgtgaaatataatacagGCTGGGTTTGCTGGGATTGGAGTTGGCGCTGCTTACTATGGTCTAAGGCCTGTTGTGGAGTTTATGACTTTTAACTTCTCCATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
gcttctc
- - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - -tggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttg