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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtataaatctttaaaatttcttttaattatcattttctaaagcattttggatgatctaatagtattaatttttgtttattctttcctactgctccaaacaagTCCGGGAGACATTAACTCTGAGATTGAG

Basic information

species Glycine max
transcript GLYMA14G34160.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395786|gb|EV265663.1|EV265663
EST:     ACCCTTCAGCAACTGAGGAGTGAAAATGACATAGCTCTTCAATTGGCTAA                         TCCGGGAGACATTAACTCTGAGATTGAG
genomic: ACCCTTCAGCAACTGAGGAGTGAAAATGACATAGCTCTTCAATTGGCTAAgttcgtataa ... tccaaacaagTCCGGGAGACATTAACTCTGAGATTGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatgatctaatagtattaatttttgtttattctttcctactgctccaaacaagTCCGGGAGACATTAACTCTGAGATTGAG
               tattaat  putative branch site (score: 2)
                     tttttgtttattcttt  CT-rich tract
      atctaatagtattaat  TA-rich tract