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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtattcctatacttctagtctctcacataaagtgaaattttataccttattttcttcccagcctgcattttcttatttgtatggtatcatgtctttttatcagGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG

Basic information

species Glycine max
transcript GLYMA14G14360.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G14360.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g40030.1 (Oryza sativa), 3'ss of exon 5
gttgtattcctatacttctagtctc-tcacataaagtgaaattttataccttattttcttcccagcctgcattttcttatttgtatggtatcatgtctttttatcagGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG
   |||    |  | ||  ||| |   |||||| | |   ||| || ||   ||   ||| | | || ||| |||                  ||| || || | ||| ||| |||||||||| |||||||| ||||| ||||||||||| |
---gtaacatttcattttcagttttgccacatacaatcccattctaaactacatag-ctttctaaccagcagttt------------------tgttttgtt-ttagGAAAATCTAGTGGTCTAAATAGCTTCGGCCTGATGTGGTGCAACG

upper sequence: GLYMA14G14360.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G020976_T01 (Zea mays), 3'ss of exon 5
gttgtattcctatacttctagtctctcacataaagtgaaattttataccttat--tttcttcccagcctgcattttcttatttgtatggtatcatgtctttttat-cagGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG
                           | |   |||    ||||  | | |||  | |  | |||   | ||   ||||  |  |  | | |  | | | ||     ||| ||| ||||||| ||||||||||||||||| |||||||||||||
-------------------------gtaaaagtagtttctttttccaacatataatgttcttccacgttacaaaatctttctgattagatgttctttttcttcccatagGAAAATCTAGTGGCCTTAATAGCTTTGGCCTGATGTGGTGCAATG

upper sequence: GLYMA14G14360.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G133226_T04 (Zea mays), 3'ss of exon 5
gttgtattcctatacttctagtctctcacataa-agtgaaattttataccttat--tttcttcccagcctgcattttcttatttgtatggtatcatgtctttttatcagGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG
                             | |  |||    ||||  | | |||  | |  |  || | | ||   ||||  |  |  | | |  | | | ||    ||| ||| ||||||| || |||||||||||||| |||||||||||||
---------------------------gtaaagcagttcctttttccaacatatagtgttctttcatcgtacaaaatctttctgatcagatgttctttttcttccatagGAAAATCTAGTGGCCTCAATAGCTTTGGCCTGATGTGGTGCAATG

upper sequence: GLYMA14G14360.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g05570.t01 (Vitis vinifera), 3'ss of exon 5
gttgtattcctatacttctagtctctcacataaagtgaaattttataccttattttcttcccagcctgcattttcttatttgtatggtatcatgtctttttatcagGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG
|| | ||| | ||  || || | | |    ||||   ||| ||   |   |    |||    ||| ||   ||||||  ||  ||| |   || |  |||| ||||||||| ||||||| |||||||||||||||||||||||||| ||||
gtagaatttccat--ttttattttattttttaaa---aaacttccaa---tgacatctcagtagcttg--atttctttcttagatgctgatattttcttttctcagGGAAATCTAGTGGCCTTAATAGCTTTGGCCTAATGTGGTGTAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405594|gb|EV275408.1|EV275408
EST:     CATGTCAAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTG                         GGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG
genomic: CATGTCAAACATCGCCACAGCAATATATCTTGCAACCATAGCCCGCATTGgttgtattcc ... tttttatcagGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcttcccagcctgcattttcttatttgtatggtatcatgtctttttatcagGGAAAACTAGTGGTCTTAATAGCTTTGGCCTAATGTGGTGCAATG
                                           tctttttatc  CT-rich tract
                  attttcttatttgtat  TA-rich tract