1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaggttatcttctagttagctttttgttatttgatttattataagattcatcttgtttgtcactatggaaaatctaaacactatgtttacagGAACTTGGAGAGTTGGTGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAG
species | Glycine max |
transcript | GLYMA14G12220.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATGAGAGGCGAAGGA-TGAAGATGCCAGGTGGCTTTGTTATGTGGGCTG GAACTTGGAGAGTTGGTGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATAEST: gi|58019366|gb|CX706108.1|CX706108
genomic: GATGAGAGGCGAAGGATTGAAGATG-CAGGTGGCTTTGTTATGTGGGCTGgtaaggttat ... atgtttacagGAACTTGGAGAGTTGGTGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATA
EST: TGATGAGAGGCGAAGGATNGAAGATGCAGGTGGCTTTGTTATGTGGGCTG GAACTTGGAGAGTTGGTGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATAEST: gi|27424402|gb|CA935922.1|CA935922
genomic: TGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTGgtaaggttat ... atgtttacagGAACTTGGAGAGTTGGTGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATA
EST: TGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTG GAACTTGGAGAGTTGGTGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATAEST: gi|120496388|gb|EH224555.1|EH224555
genomic: TGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTGgtaaggttat ... atgtttacagGAACTTGGAGAGTTGGTGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATA
EST: TGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTG GAACTTTGGAGAGTTGGTGGAGTACTTGCTGTTTCACGTTGCATTTGGTGA
genomic: TGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTGgtaaggttat ... atgtttacagGAACTT-GGAGAGTTGGTGGAGTTCTTGCTGTTTCACGT-GCATTTGGTGA
attataagattcatcttgtttgtcactatggaaaatctaaacactatgtttacagGAACTTGGAGAGTTGGTGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAG
atctaaa putative branch site (score: 3)
aaaatctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttatcttctagttagctttttgttatttgatttattataagattcatcttgtttgtcactatggaaaatctaaacactatgtttacagGAACTTGGAGAGTTGGTGGAGTTCTTGCTGTTTCACGTGCATTTGGTGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT