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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtatttttgtgcttgctttgttctattaagttattttatttaacagatgtggtttgtatgcaatagtgattttccaaatatggatgttgctgtgcagTGTTAAACATGAATTTGAAGGGAAGTGGGATGAAAAGACCACCCGTTTGACAAACTGTGATCCTCATGCTAAACACACAGTTGTCAATTCTAACAGTCCT

Basic information

species Glycine max
transcript GLYMA14G11780.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716722|gb|BW654317.1|BW654317
EST:     ACGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTAAGGCATTCAG                         TGTTAAACATGAATTTGAAGGGAAGTGGGATGAAAAGACCACCCGTTTG
genomic: ACGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGGTTAAGGCATTCAGgtcagtattt ... tgctgtgcagTGTTAAACATGAATTTGAAGGGAAGTGGGATGAAAAGACCACCCGTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagatgtggtttgtatgcaatagtgattttccaaatatggatgttgctgtgcagTGTTAAACATGAATTTGAAGGGAAGTGGGATGAAAAGACCACCCGTTTGACAAACTGTGATCCTCATGCTAAACACACAGTTGTCAATTCTAACAGTCCT
 atttaac  putative branch site (score: 3)
                                 aaatat  TA-rich tract