1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtggtagtgtggtactatgtatcgtggtatccattgaatgtttttgatggccatgatttttatagtgacctcattattctagacataataatgattaataattcctatatgttccttcgagtcatttggtttgtccctcgttaactttgagggtttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
species | Glycine max |
transcript | GLYMA14G10520.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATT GTGGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAGEST: gi|10843821|gb|BF067074.1|BF067074
genomic: GCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTgtggtagtgt ... ttgcatgtagG---CATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
EST: TGCAGATCCACGTTATT GCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAGEST: gi|9820152|gb|BE555662.1|BE555662
genomic: TGCAGATCCACGTTATTgtggtagtgt ... ttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
EST: ACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTEST: gi|9820152|gb|BE555662.1|BE555662
genomic: ACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTA-T-Tgtggtagtgt ... ttgcatgta
EST: ACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGT
genomic: ACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTA-T-Tgtggtagtgt ... ttgcatgta
tgttccttcgagtcatttggtttgtccctcgttaactttgagggtttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
cgttaac putative branch site (score: 3)
ttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtagtgtggtactatgtatcgtggtatccattgaatgtttttgatggccatgatttttatagtgacctcattattctagacataataatgattaataattcctatatgttccttcgagtcatttggtttgtccctcgttaactttgagggtttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT