1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagtgtggtactatgtatcgtggtatccattgaatgtttttgatggccatgatttttatagtgacctcattattctagacataataatgattaataattcctatatgttccttcgagtcatttggtttgtccctcgttaactttgagggtttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
species | Glycine max |
transcript | GLYMA14G10520.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG GCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAGEST: gi|10843821|gb|BF067074.1|BF067074
genomic: ACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
EST: TGCAGATCCACGTTA-T-T- GCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAGEST: gi|192326693|gb|FK018880.1|FK018880
genomic: TGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
EST: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTG GCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
genomic: AGATGACTACATTTCATTTGTTGGCCTCCTTGCAGATCCACGTTATTGTGgtagtgtggt ... ttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
tgttccttcgagtcatttggtttgtccctcgttaactttgagggtttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
cgttaac putative branch site (score: 3)
ttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgtggtactatgtatcgtggtatccattgaatgtttttgatggccatgatttttatagtgacctcattattctagacataataatgattaataattcctatatgttccttcgagtcatttggtttgtccctcgttaactttgagggtttgcatgtagGCATATCATATGATGAGAAGGAAGAAGTTCGTGTCCTTCTTCGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT