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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgctttgatcttagtcatgtcatgaaatttctggcacaattgggaattttaatagcgattccgttcttaagcacactgaaattacatgttatgcttctattgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCTACCCGAATAATAAAGATAGTGTGCAGGTCATGAAGTCCTATTTTGATG

Basic information

species Glycine max
transcript GLYMA14G08180.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26059938|gb|CA802852.1|CA802852
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|209723371|gb|BW651327.1|BW651327
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|209723023|gb|BW668869.1|BW668869
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|208265293|gb|GE064487.1|GE064487
EST:     ATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGTAAGCTTTTTGGTAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCTAGAAGGTGAAGTTTG
genomic: ATAGCATTTCTTTACAACCCCCCTCGAGTTTTTG-AAGCTTTTTGG-AAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTC-AGAAGGTGAAGTTTG
EST: gi|6454433|gb|AW185116.1|AW185116
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTNTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|11411906|gb|BF423917.1|BF423917
EST:     CCATATCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|192309911|gb|FK001455.1|FK001455
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|207692539|gb|GD674036.1|GD674036
EST:     CCATTGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
EST: gi|209723024|gb|BW668870.1|BW668870
EST:     CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAG                         ATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC
genomic: CCATAGCATTTCTTTACAACCCCCCTCGAGTTTTTGAAGCTTTTTGGAAGgtttgtttgc ... attgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgattccgttcttaagcacactgaaattacatgttatgcttctattgatgcagATAGTCAAGTACTTCTTGGACAACAAGACATTTCAGAAGGTGAAGTTTGTCTACCCGAATAATAAAGATAGTGTGCAGGTCATGAAGTCCTATTTTGATG
                                            tattgat  putative branch site (score: 3)
                                        cttctatt  CT-rich tract
                         aaattacatgttat  TA-rich tract