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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaattgtttcatttctgaattccattgtgttttaaggttttgtttaatctcaaatgtaatgttccttatcctacatgttggtgtagGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAG

Basic information

species Glycine max
transcript GLYMA14G07750.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07750.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 5
-----------gtcagaattgtttcatttctgaattccattgtgttttaaggttttgttt---aatctcaaatgtaatgttccttatcctacatgttggtgtagGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAG
               |   |||| ||||| | |  |  | | || | | ||  ||| |     ||| | |  || ||||     | |  | |       |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| 
gtcagacttacacttggtgtgttgcattt-taagatgtactttgatctgagaatttttccctaaatttaatctgcaatgccttcttttttcctctggtttgtagGTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278601|gb|BI942988.1|BI942988
EST:     CATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAG                         GTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTA
genomic: CATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAGgtcagaattg ... gttggtgtagGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTA
EST: gi|24205453|gb|BU964706.1|BU964706
EST:     CATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAG                         GTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTA
genomic: CATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAGgtcagaattg ... gttggtgtagGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTA
EST: gi|57574105|gb|CX547080.1|CX547080
EST:     ATTGTTAGCTAGGGCAA-TGCCNAGTAACATAGAAGCTAACTTCTTGAAG                         GTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTA
genomic: ATTGTTAGCTAGGGCAATTGCC-AGTAACATAGAAGCTAACTTCTTGAAGgtcagaattg ... gttggtgtagGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTA
EST: gi|193372457|gb|FK337410.1|FK337410
EST:     CATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAG                         GTTGTT-CAAGTG
genomic: CATTGTTAGCTAGGGCAATTGCCAGTAACATAGAAGCTAACTTCTTGAAGgtcagaattg ... gttggtgtagGTTGTTTCAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaggttttgtttaatctcaaatgtaatgttccttatcctacatgttggtgtagGTTGTTTCAAGTGCAATAATTGATAAATACATTGGAGAAAGTGCCAGGTTAATTCGAGAAATGTTTGGCTATGCACGTGATCACCAG
          gtttaat  putative branch site (score: 4)
      ttttgtttaat  TA-rich tract