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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttaacttcactatactccttatacttaatatatattttattgcaaatctcaatactttgttctatccctgctaaatatggtctatagtctttggctttttgtttatttttttctgttgatgttggtgattgccagCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCAGGAG

Basic information

species Glycine max
transcript GLYMA14G07670.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07670.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g13280.t01 (Vitis vinifera), 3'ss of exon 5
------------------------------gttggtta-acttcactatactcc-ttatacttaatatatattttat-tgcaaatctcaatactttgttc---tatccctgctaaatatggtctatagtctttggctttttgtttatttttttctgttgatgttggtgattgccagCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCAGGAG---------
                              ||  | || |  |   | ||     || |||  | |||||  ||| | ||||||  ||| |   |  |||   ||| | |  |||  ||| |||| | | ||||  |   | ||   |      ||| | |  |||||  |  |||||||    ||||| || | |    | || |||||  |||| |||||||||||  |||||||||||||||||||||  || |||         
gtgtgtttccactggttcctacttgcttctgtatgctatatctggttgtaggatgttgtacaca-tatatgctttttatgcaaaattcattttctgattccattattctttttaataatgctctaaactgtttgattcactcttggct------tgtggttcatggtgtatatcagCACATGCCAACCTCCCTAGCTGTTCAGCAATGGAAAGGCTGATACAACAGACAACAGTAGTTAGACAATGCTTAAATCAAGAGCTTAGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatagtctttggctttttgtttatttttttctgttgatgttggtgattgccagCACACTTTAACCTTCCCATCCACACTGCCATGGAGCGGCTTATACAACAGACCTCAGTAGTTAGACAATGCTTAAGCCAGGAG
                                 tgttgat  putative branch site (score: 4)
               tttttgtttatttttt  TA-rich tract