1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgttgtgctatttactgaaagcaagtgcatttgttcttaaataattggacttttggtttgtgataccactttttttataatattgcaatcttaatgcagCTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCCCAGAAGCAGGCCTTAGCTAAGCAACTTCAACAAATCAATACATCAATAG
species | Glycine max |
transcript | GLYMA14G05490.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCAGGTGATCGAGAGGGATGACTATAATATTAAG CTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCCEST: gi|6951761|gb|AW423829.1|AW423829
genomic: ACCAGGTGATCGAGAGGGATGACTATAATATTAAGgtatgtctta ... cttaatgcagCTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCC
EST: ACCAAAATCTGTTGAACCAGGTGATCGAGAGGGATGACTATAATATTAAG CTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCCEST: gi|19269212|gb|BM885468.1|BM885468
genomic: ACCAAAATCTGTTGAACCAGGTGATCGAGAGGGATGACTATAATATTAAGgtatgtctta ... cttaatgcagCTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCC
EST: ACCAAAATCTGTTGAACCAGGTGATCGAGAGGGATGACTATAATATTAAG CTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCC
genomic: ACCAAAATCTGTTGAACCAGGTGATCGAGAGGGATGACTATAATATTAAGgtatgtctta ... cttaatgcagCTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCC
ttggacttttggtttgtgataccactttttttataatattgcaatcttaatgcagCTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCCCAGAAGCAGGCCTTAGCTAAGCAACTTCAACAAATCAATACATCAATAG
tcttaat putative branch site (score: 3)
actttttttataatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttgtgctatttactgaaagcaagtgcatttgttcttaaataattggacttttggtttgtgataccactttttttataatattgcaatcttaatgcagCTTGTATCAGATAGTGTGAAGACAAAACAGGCGCACAACACTTTAATGTCCCAGAAGCAGGCCTTAGCTAAGCAACTTCAACAAATCAATACATCAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-tgttgtg
- - - - - - - -ctgaaag
- - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgca