1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attggggttcttaacagagttacaggtaatagtgtcagttatttttttttgagtaagcaatatacagttatctccaacctttttgcttcatttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG
species | Glycine max |
transcript | GLYMA14G05430.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAG CCGATTGAGAGTCATTGCAGAACTAAGACATGGGGATATATTTCATTCAGCEST: gi|105633923|gb|DW247286.1|DW247286
genomic: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAGgtatagttgt ... tttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
EST: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAG CCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCEST: gi|8669857|gb|BE190964.1|BE190964
genomic: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAGgtatagttgt ... tttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
EST: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAG CCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
genomic: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAGgtatagttgt ... tttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
tttttgagtaagcaatatacagttatctccaacctttttgcttcatttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG
cctttttgcttcattt CT-rich tract
aatataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attggggttcttaacagagttacaggtaatagtgtcagttatttttttttgagtaagcaatatacagttatctccaacctttttgcttcatttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG
- tggggtt