Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attggggttcttaacagagttacaggtaatagtgtcagttatttttttttgagtaagcaatatacagttatctccaacctttttgcttcatttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG

Basic information

species Glycine max
transcript GLYMA14G05430.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G05430.1 (Glycine max), 3'ss of exon 5
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 3'ss of exon 5
attggggttcttaacagagttacaggtaatagt--gtcagttatttttttttgagtaagcaatatacagttatctccaaccttt-ttgcttcatttgaa-acagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG
           ||   |||| ||      |  |   || ||       |    |   ||   | |  | |||  |      ||  ||||    |||    |||| ||  | ||||| || |||||| |  ||||||||||||||||||||||||| || || || |||||
----------gtagaggagtgactatcccttttcaatcggtctagccgtacataaagagtgttttcgaattagttggggttttaattgcactctttattcacagTCGTCTAAGAGTTATAGCAGAAATCCGGCATGGGGATATATTTCATTCAGCCAACATTGTATCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522003|gb|BU080814.1|BU080814
EST:     GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAG                         CCGATTGAGAGTCATTGCAGAACTAAGACATGGGGATATATTTCATTCAGC
genomic: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAGgtatagttgt ... tttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
EST: gi|105633923|gb|DW247286.1|DW247286
EST:     GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAG                         CCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
genomic: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAGgtatagttgt ... tttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
EST: gi|8669857|gb|BE190964.1|BE190964
EST:     GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAG                         CCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
genomic: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAGgtatagttgt ... tttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
EST: gi|151403867|gb|EV273677.1|EV273677
EST:     GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAG                         CCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC
genomic: GCTGGTCTTGAAGATTTTCAGTCAGTCTTGACAACTTTCACACGCTATAGgtatagttgt ... tttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgagtaagcaatatacagttatctccaacctttttgcttcatttgaaacagCCGATTGAGAGTCATTGCAGAACTAAGGCATGGGGATATATTTCATTCAGCAAATATAGTGTCAAG
                                cctttttgcttcattt  CT-rich tract
             aatataca  TA-rich tract