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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaattgcctgtgttgttttgtaattgctacttaaggaattcatacacaagtccgtgacatgcatcattggaatgtttcagCCACCTTGGGACGAAAATGTTGAGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAG

Basic information

species Glycine max
transcript GLYMA14G03930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 5
-------------------gtttgaattgcctgtgttgttttgtaattgctacttaaggaattcatacacaagtccgtgacatgcatcattggaatgtttcagCCACCTTGGGACGAAAATGTTGAGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAG
                     |  |  ||| | |     ||| |  ||  |  |||  ||||    |||    ||  | ||||||||| ||| ||  |||||||| || |||||     | |||| ||| |||||||| ||||| |||||||||||||||||||| ||| |||||
gtttgcatgtgtcctgatgactcaatctgcatatcaccatttcttcttaatgtttatagaatat-cacatggatcactaacatgcatc-ttgtaagttttcagCCTCCATGGGATTTGGAAGTTGGGAAGAAGTTTATTATCCATTATACATATGGATGTGACTACAATTTGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctacttaaggaattcatacacaagtccgtgacatgcatcattggaatgtttcagCCACCTTGGGACGAAAATGTTGAGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAG
           aattcata  TA-rich tract