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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttgcacctaaatatgcactctatatgtcatgttatttatttactaatgcacatactgtgtttgtgaagGTATCTTGATGCAGCTGGAATGAAGAAGTCAAAAGCTTATCTCATCAATGGGGTTGTGATATTCATTGCTTGGCTG

Basic information

species Glycine max
transcript GLYMA14G03520.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03520.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0028g01000.t01 (Vitis vinifera), 3'ss of exon 5
gtaatcttgcaccta-aatatgcactc-----tatatgtcatgttatttatttactaatgcacatactgtgtttgtgaagGTATCTTGATGCAGCTGGAATGAAGAAGTCAAAAGCTTATCTCATCAATGGGGTTGTGATATTCATTGCTTGGCTG
||||      ||  | || |||   |      | |  ||  || | | | |||  | ||   ||   || |||||| ||||||||||||||  ||||||||||||| |||   ||| ||| |||| |||||||||||||| ||| |||||||||||
gtaacacccaactaataaaatgagttgacaggttttagttctgctctctcttttttgatttgcaacttgggtttgt-aagGTATCTTGATGTTGCTGGAATGAAGAGGTCCGGAGCATATGTCATGAATGGGGTTGTGATTTTCTTTGCTTGGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098376|gb|HO760117.1|HO760117
EST:     TACATGGTCCTGATCTCTGAGACAACAACTCCTGGGATCAACTTGAGATG                         GTATCTTGATGCAGCTGGAATGAAGAAGTCAAAAGCTTATCTCATCAATGG
genomic: TACATGGTCCTGATCTCTGAGACAACAACTCCTGGGATCAACTTGAGATGgtaatcttgc ... gtttgtgaagGTATCTTGATGCAGCTGGAATGAAGAAGTCAAAAGCTTATCTCATCAATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcactctatatgtcatgttatttatttactaatgcacatactgtgtttgtgaagGTATCTTGATGCAGCTGGAATGAAGAAGTCAAAAGCTTATCTCATCAATGGGGTTGTGATATTCATTGCTTGGCTG
                           tactaat  putative branch site (score: 1)
       tatatgtcatgttatt  TA-rich tract