1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgactgcttcgtacgaagggaattataaaatcttgcaaatttatgcctgatatttatatttcttctaacatgaacattacacttgctggaaaaatgcagGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG
species | Glycine max |
transcript | GLYMA14G03100.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGG GAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGEST: gi|208178707|gb|GD977876.1|GD977876
genomic: CATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGGgtactcatca ... aaaaatgcagGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG
EST: CATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGG GAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGAEST: gi|208046429|gb|GD849069.1|GD849069
genomic: CATGAAACTTTGTTTGCCGATATCGAGTTCATGCAAAAGCGGgtactcatca ... aaaaatgcagGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAGA
EST: AACTTTGTTTGCCGATTATTCGTAGTTTCATGCAAAAGCGG GAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG
genomic: AACTTTGTTTGCCGA-TA-TCG-AG-TTCATGCAAAAGCGGgtactcatca ... aaaaatgcagGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG
gcctgatatttatatttcttctaacatgaacattacacttgctggaaaaatgcagGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG
ttctaac putative branch site (score: 1)
atatttatatttcttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgactgcttcgtacgaagggaattataaaatcttgcaaatttatgcctgatatttatatttcttctaacatgaacattacacttgctggaaaaatgcagGAAATAGAGCTGCAAAACCATAATAATTTTCTGAGAGCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT