Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaatcttgattgggtgctgtcatctatgaggaaatatttatgatgttcctaatgatggtgaaataaattcagGATTTATCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTACATTCCATTGCCAGGATTGATTTCTCATTGG

Basic information

species Glycine max
transcript GLYMA14G02210.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02210.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM5G825110_T01 (Zea mays), 3'ss of exon 7
-----gta-acaatcttga-----ttgggtgctgtcatc-tatgaggaaatatttatgatgttcctaatgatggtg---aaataaattcagGATTTATCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTACATTCCATTGCCAGGATTGATTTCTCATTGG
     ||| |   |||| |       |  |   ||  |  ||||   || |  || |  |||| |||||  |  |    |||||| |||||||| | |||||||| |||||| | ||||| ||||  ||||| |||||||||||  |     |||||  ||  | | |  | ||||||
gttacgtagattttcttcagaaatcagaatatggttgttgtatggctaagttgttgttgtgttgctaatttttttatgcaaataatttcagGATCTGTCAACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG

upper sequence: GLYMA14G02210.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0090g01220.t01 (Vitis vinifera), 3'ss of exon 6
gtaacaatcttgattgggtg---ctgtcatctatgaggaaatat--ttatgatgttcctaatgatggt---------gaaataaattcagGATTTATCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTACATTCCATTGCCAGGATTGATTTCTCATTGG
||||   | ||||  ||||       |||| | ||| |||||||   | |  | || | ||  ||| |         |||||  || |||||||||||||||||||||||||  ||||| ||||||||| |||||||||||||  |   ||| || | || || | || | || |||
gtaattcttttgacagggtaaattcatcatgtttgaagaaatatgcctgtactatttcaaacaatgctcttatggtggaaatggatgcagGATTTATCAACTGGTTGGCTTCGATGTGATCCTGACCCACTTTTTAAGCCAGAGCATTATCCTTTACTAGAATGGGTTCCACAATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcatctatgaggaaatatttatgatgttcctaatgatggtgaaataaattcagGATTTATCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTACATTCCATTGCCAGGATTGATTTCTCATTGG
                             tcctaat  putative branch site (score: 2)
              aaatatttatgatgtt  TA-rich tract