1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcccagagtgatattacctactaaatgttttgcattcattacttgcttgacttttaatctaataccattttctttactttgacatggatatatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACTCATCCCGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAG
species | Glycine max |
transcript | GLYMA14G02180.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAG CTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACTEST: gi|38193636|gb|CF922842.1|CF922842
genomic: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAGgtaatgcatt ... tatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACT
EST: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAG CTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACTEST: gi|192314484|gb|FK008426.1|FK008426
genomic: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAGgtaatgcatt ... tatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACT
EST: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAG CTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACTEST: gi|207712616|gb|GD694528.1|GD694528
genomic: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAGgtaatgcatt ... tatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACT
EST: CGCTG-AAGAAGNT-AAAAACAGAGGCTGCACAAG CTCCAAGAATTAGCTTCTCAGTTAATTGATCTTTGGAATCTAATGGATACTEST: gi|5058140|gb|AI736616.1|AI736616
genomic: CGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAGgtaatgcatt ... tatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACT
EST: AGAAGATAAAAAACAGAGGCTGCACAAG CTCCAAGAATTAGCTTCTCAGTTAATTGATCTTTGGAATCTAATGGATACTEST: gi|192314483|gb|FK008425.1|FK008425
genomic: AGAAGATAAAAAACAGAGGCTGCACAAGgtaatgcatt ... tatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACT
EST: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAG CTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACTEST: gi|207690818|gb|GD673702.1|GD673702
genomic: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAGgtaatgcatt ... tatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACT
EST: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAG CTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACT
genomic: CTAAGACCGTCTTAACGCTGAAAGAAGATAAAAAACAGAGGCTGCACAAGgtaatgcatt ... tatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACT
cttgacttttaatctaataccattttctttactttgacatggatatatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACTCATCCCGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAG
ttttaatctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccagagtgatattacctactaaatgttttgcattcattacttgcttgacttttaatctaataccattttctttactttgacatggatatatcatgcagCTCCAAGAATTAGCTTCTCAGTTGATTGATCTTTGGAATCTAATGGATACTCATCCCGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - -gcattca
- - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggat