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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgatgggtgcattggttttaaatttactatttttaattggatgatgtgccataaggtttgaatttggattggttcagTTGTCTTTTCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAAGCAAGGAAGCGCGGAGACCATGCATTCCGTGACAAGGACTTTAGGACAGCCATTG

Basic information

species Glycine max
transcript GLYMA14G00540.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00540.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os10g39670.1 (Oryza sativa), 3'ss of exon 7
-------------------------------------gtaactgatgggtgcattggttttaaatttactatttttaattggatgatgtgccataaggtttgaatttggattggttcagTTGTCTTTTCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAAGCAAGGAAGCGCGGAGACCATGCATTCCGTGACAAGGACTTTAGGACAGCCATTG
                                      || ||| | ||   | ||||      |  ||| ||||         |    |     |  ||    ||    |   | ||| | ||||| ||||| |||||||||||||||||||||||| |||| || ||||| || || ||   |||||| || |||||  | || | |  |||||| |
gtaaagacaatatagagcactgtggctccactcttttctagctggttgggatactggtccctc-tcgactgttttcttcctatggggacgtgtctaaatt---gttctcctctctgcagCTATCTTTCCAAGAATGGACTCAACAGATGAGAGATATGTTGGATGCTAGGAAACGTGGTGATTTTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAG

upper sequence: GLYMA14G00540.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G026767_T01 (Zea mays), 3'ss of exon 6
--gtaactgatgggtgcattggttttaaatttactatttttaattggatgatgtgccataaggtttgaatttggattggttcagTTGTCTTTTCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAAGCAAGGAAGCGCGGAGACCATGCATTCCGTGACAAGGACTTTAGGACAGCCATTG
    ||   |   ||||| |    ||  | |    || ||   | |||   | ||  |  ||  |  | | |  |||  | ||| ||||||||||||| ||||| || |||||||| ||||||||||| |||||||| || || |||  ||| |||   ||||| || |||| | |||| || |
gtaaaataaaccagtgcactctggttccaatcttcatgttctgtaggacc-tctgaaaccagcatc-attctccattc-tgcagCTGTCTTTTCAAGAATGGACACAGCAGATGAGGGATATGCTGGATGCAAGGAAACGTGGCGACTCTGCCTTCAAAGACAAAGATTTTAAGGCAGCAATCG

upper sequence: GLYMA14G00540.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 3'ss of exon 7
--------gtaactgatgggtgcattggttttaaatttac-tattttta-attggatgatgtgccataaggtttgaatttggattggttcagTTGTCTTTTCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAAGCAAGGAAGCGCGGAGACCATGCATTCCGTGACAAGGACTTTAGGACAGCCATTG
        ||   |||||   |  ||  |||   || |   || | ||| ||   ||| || |   |     |||   ||| ||||||||||||||| || ||||| ||||| |||||||||||||||||||| |||||||||||||| || |||  |||||||||||||||||| ||||  || |||||||
gtaattgagttgttgatgaaggtttttttttggcatctctatactcttacatccaatggtgagtggtttatcttggtgttgtattggttcagTTGTCCTTCCAAGAATGGACCCAACAGATGAGAGATATGCTAGAAGCAAGGAAGCGTGGGGACTTTGCATTCCGTGACAAGGATTTTAAAACTGCCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactatttttaattggatgatgtgccataaggtttgaatttggattggttcagTTGTCTTTTCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAAGCAAGGAAGCGCGGAGACCATGCATTCCGTGACAAGGACTTTAGGACAGCCATTG
        ttttaat  putative branch site (score: 3)
     tatttttaattggat  TA-rich tract