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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaactttatcctgaatatctttatcttttcatttgttagttggggatcattgtctgtgtagtttgtcctccttgaaagggttgtgatgcagcctggtgtgtcatttattccatcttctatatgtgtgtgacttattactgaatcatcactgtggagcttaccttgcagTGTTTAACATGGGAGGTGGCAATCCTGGTGGTATGATGCCCATACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACATGGTTCACAAGCATTTGGTAG

Basic information

species Glycine max
transcript GLYMA13G45020.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G45020.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0054g00970.t01 (Vitis vinifera), 3'ss of exon 11
gtatgaactttatcctgaatatctttatcttttcatttgttagttggggatcattgtctgtgtagtttgtcctccttgaaagggttgtgatgca------gcctggtgtgtc-atttattccatcttctatatgtg--tgtg-acttatta--ctgaatcatcactgtggagcttaccttgcagTGTTTAACATGGGAGGTGGCAATCCTGGTGGTATGATGCCCATACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACATG-GTTCACAAGCATTTGGTAG--
||||||||    | |    |  | || |||||     |  | | || |    | | ||     |     |  |    || |   |  |||||||      ||    ||| ||  |  |    |   |  ||||     |||| |||  |||  || ||     |||    |  || || ||||||||| |||||||| |  |  ||||| ||||||||||||||||| || ||||| |||||||||||   ||    ||||  ||  |||   | |||         
gtatgaacacccttc-acttgccattttctttcttggtacttgatgtgctaaactttcgagaaaagggataatatacgacacaatc-tgatgcataatgtgctcattgtatctgtccaacaaaagctagatatacagctgtgcactctttaggctaaactgcaactact-actttcccatgcagTGTTCAACATGGGGGCAGCAAATCCGGGTGGTATGATGCCCATGCAGCAGCAACAGCAGCAGCA-TGGC--TCACAAGGTGCATTCGGTAACATGCAACCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctatatgtgtgtgacttattactgaatcatcactgtggagcttaccttgcagTGTTTAACATGGGAGGTGGCAATCCTGGTGGTATGATGCCCATACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACATGGTTCACAAGCATTTGGTAG
                                         agcttac  putative branch site (score: 3)
                                           cttacctt  CT-rich tract
                acttatta  TA-rich tract