1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtctctctctctctctctttctctctctctctcccactgaaattatcaacagctagtatgattttagaacttcttgggtggccaccagataatattcccaaagaatatgctgattgaccataacagtagcagtagtttttttttttttttttataaaaaaaattataaaatttctgagtattttctcttatttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA
species | Glycine max |
transcript | GLYMA13G43830.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|58015307|gb|CX702049.1|CX702049
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TGGAACTTACATTCCAGAGCCCCCTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|4283061|gb|AI440609.1|AI440609
genomic: TGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|26268906|gb|CA819969.1|CA819969
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAEST: gi|26048873|gb|CA785326.1|CA785326
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGA
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATEST: gi|7588129|gb|AW703931.1|AW703931
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
EST: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAG AGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGGTGGTGATAAT
genomic: TAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCTTCTAAAGgtctctctct ... atttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAAT
ttttttttataaaaaaaattataaaatttctgagtattttctcttatttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA
tattttctcttattt CT-rich tract
tttataaaaaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctctctctctctctttctctctctctctcccactgaaattatcaacagctagtatgattttagaacttcttgggtggccaccagataatattcccaaagaatatgctgattgaccataacagtagcagtagtttttttttttttttttataaaaaaaattataaaatttctgagtattttctcttatttgatcagAGGATTTCAGATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG