Sequence
atgc intronic sequence ATGC exonic sequencegtacatgaagtcatgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgcttgaagacacttttctttgtatatttcatgatttcttacttagaagaccactgaagctcttatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
Basic information
species | Glycine max |
transcript | GLYMA13G43680.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G124886_T04 (Zea mays), 3'ss of exon 5
gtacatgaagtcatgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgcttgaagacacttttctttgtatatttcatgatttcttacttagaagaccactg-aagctcttatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
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--------------------------------------------------------------gtatgctcacccaactttctgtgtgcttcttg--tccgt-----gaggtttacttcatgctaatattcaataacaattt-cagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGATGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G141587_T01 (Zea mays), 3'ss of exon 5
gtacatgaagtcatgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgcttgaagacacttttctttgtatatttcatgatttcttacttagaagaccactgaagctcttatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
| || | | | || | || | ||| | | ||||| || | ||| ||| | | | | ||| ||||| | ||||| || ||||||||||| || || |||||||||||||| || || |||||||| || ||||| || || || ||||||||||| || |||||
--------------------------------------------------------------gtatgcacaaccaattttctgcttgcttc-----tcttcccttaggtttacatc-atgctgatattccataacaattt-cagTTCGTTCGGCTAAATTTATTGCACGTAAGCAATGGGTTGTTGCTGGTGCCGACGATATGTTCATCCGTGTGTACAACTATAACACAATGGACAAGGTCAA
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G443953_T01 (Zea mays), 3'ss of exon 6
gtacatgaagtcatgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgct--tgaagacacttttctttgtatatttcatgatttcttacttagaagaccactgaagctcttatacaacatgatt-ttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
| ||||| | | | || ||| |||||| | | |||| || ||| | | | | | |||| | || | |||| | |||||||| | ||||| || |||||||||| || || |||||||||||||| || ||||| ||||| || ||||| ||||| || || || |||||||| |||||
-----------------------------------tgagtctaagaagactcaaacaagcccattactgtctacagttttctgtatgcattt-gtgtttttgtgc----------aattatgctcatgta-accatgttaattgcagTTCGTTCGGCTAAATTTATTGCACAGAAGCAATGGGTTGTTGCTGGTGCCGATGACATGTTCATCCGTGTGTATAACTATAATACCATGGATAAGGTCAA
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 5
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 3'ss of exon 5
gtacatgaagtcatgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgcttgaagacacttttctttgtatatttcatgatttcttacttagaagaccactgaa---gctcttatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
| | || | | | | | ||| ||| | ||| || ||| |||| |||||| | | | || | ||| ||| | ||| || || | |||| ||||||||| | || ||||||||| | ||||| || || |||||||| || ||||| |||||||||| ||| |||||||| ||||||||||| ||||| || || ||
-----------------------gtatacggcttttgttcttttgtgtcttttgttatattg--ttcaag----tttttgttgtatgtactaagtactcgtgtctagtttgttacttattctgcttttttatattatgactttgcagTTCGGTCAGCCAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTGATGATATGTATATCCGTGTATACAATTACAACACCATGGACAAGGTTAA
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 5
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 3'ss of exon 5
gtacatgaagtc-atgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgcttgaagacacttttctttgtatatttcatgatttcttacttagaagaccactgaagctcttatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
||| | |||| |||| | | ||||| | ||||| ||| || | | || ||||| | || | ||||||| | | | | |||||| | |||| ||| ||||||||||| ||||||||||||||| | ||||| || |||||||| |||||||| |||||||||| || |||||||| |||||||| |||||||| || |||||
gtataacaagtttatgagcatcttctgatttcattgtt-----atagattttt-----cacttgct-----gtatattgccttgtatagtctgtcgctgtt-------------actgaaatttatata-----tgactttgcagTTAGGTCGGCCAAGTTTATTCCGCGCAAGCAATGGGTTGTGGCTGGAGCGGATGATATGTACATCCGTGTATACAATTACAATACAATGGACAAGGTCAA
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 5
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 9
gtacatgaagtcatgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgcttgaagacacttttctttgtatatttcatgatttcttacttagaagaccactgaagctcttatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
| || | | || | || |||| | ||| | | | | | | | |||| |||| | | ||||||| | || || ||||| |||||||| || ||||||||||| |||||||| ||||| |||||||||||||| || || |||||||| |||||||| ||||
----------------------------------------------------------gtatgatatatagca--tctcattgt-tccttcttattctttcgcacatcat-ttgttgaatctctgtcctggtgt---tgtgcagTTCGGTCAGCAAAGTTCATTGCACGGAAGCAGTGGGTTGTAGCTGGAGCTGATGACATGTTTATTCGTGTCTACAACTACAACACTATGGATAAGATCAA
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 5
gtacatgaagtcatgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgcttgaagacacttttctttgtatatttcatgatttcttacttagaagaccactgaa-gctcttatacaacatgatt-ttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
||| | |||| || || |||| | | | || || ||| | |||| | || | | | || |||| | ||||| | ||||| | ||| | | | | | || |||| || |||||||||| || || |||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||
--gtatgta--catgtactttatctgtttc---catatg-ctctatttggtgtgattgaattcccttgatccatttttactca---atttc----tctcttattggtaaggttattacatgtttcaattttacattatcattgcagTTAGGTCAGCGAAGTTTATAGCACGCAAGCAATGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATACAATTATAACACAATGGATAAGGTTAA
upper sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 5
gtacatgaagtcatgaaccttttctggtccatttgtttgtctatatatctcttgatgcatttgcttgaagacacttttctttgtatatttcatgatttcttacttagaagaccactgaagctcttatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
| || || | || | |||| || | || | || | | || || | | | | || ||| ||||||| | || || || ||||| || || || |||||||| ||||||||||| ||||| |||||||| |||||||| |||||||| || |||||||| || |
----------------------------------------------------------gtatg-ttattcatacatgacttttaatttctccagtcttggca-tggtaatttcattta----catctaaggcatctgcttgcagTCCGGTCAGCAAAATTTATAGCTCGTAAGCAGTGGGTGGTTGCTGGAGCTGATGACATGTTTATCCGTGTATACAATTACAATACTATGGATAAGGTTACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213613750|gb|DB961247.1|DB961247EST: ACCATGGCCAAATCTTTTGAGGTTACCGAGTTACCAG TTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAG
genomic: ACCATGGCCAAATCTTTTGAGGTTACCGAGTTACCAGgtacatgaag ... gattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatgatttcttacttagaagaccactgaagctcttatacaacatgattttgcagTTAGATCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAA
ttcttac putative branch site (score: 2)
atttctta TA-rich tract