1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gaagaaagaattggaagtggttgaagttctttctttttcaaactttgacaattgcttttttgagaatttgtagtactaacctgtgttttaaaatatgtagGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG
species | Glycine max |
transcript | GLYMA13G42800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCAT-G-- GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGEST: gi|7686354|gb|AW757002.1|AW757002
genomic: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAgttgtatcca ... aaatatgtagGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCG
EST: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTA GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGEST: gi|19936402|gb|BQ080848.1|BQ080848
genomic: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAgttgtatcca ... aaatatgtagGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCG
EST: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCAT-G-- GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGEST: gi|207770869|gb|GD743421.1|GD743421
genomic: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAgttgtatcca ... aaatatgtagGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCG
EST: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTA GTAAGTAGCCATAGAAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGEST: gi|21887329|gb|BQ740542.1|BQ740542
genomic: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAgttgtatcca ... aaatatgtagGTAAGTAGCCAT-G-AAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATG
EST: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTA GTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCG
genomic: ACTTTTCATTTCCACCAGGAGGCATACCATCACTAAGATTACCCATGGTAgttgtatcca ... aaatatgtagGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCG
tgacaattgcttttttgagaatttgtagtactaacctgtgttttaaaatatgtagGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG
tactaac putative branch site (score: 0)
tgttttaaaatatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagaaagaattggaagtggttgaagttctttctttttcaaactttgacaattgcttttttgagaatttgtagtactaacctgtgttttaaaatatgtagGTAAGTAGCCATGAAACCAGCTTAGTTGCCCGATGCCGTAGAGTGTATGCGCATGCTCATGATTATCACATCAATTCTATTTCAAATAACAG
-aagaaaga
- - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - -tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtgt