1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...accgtgttgttgctgatgcaaagtgtatcaagtcagttacttgataagcttgtagttctggttgcatcttcaattattgagaatttcgtccatgttgcagATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATATACTGTGGACACGAGTATACATTG
species | Glycine max |
transcript | GLYMA13G42070.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTTTAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAG ATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATAEST: gi|31309192|gb|CD394395.1|CD394395
genomic: CTTTGTTTAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAGgttggtttta ... catgttgcagATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATA
EST: CTTTGTTTAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAG ATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACTAATATAEST: gi|192307272|gb|FK002364.1|FK002364
genomic: CTTTGTTTAGCTTATCATGTGGCAAGCTCTTTGAAGGAACCCCACAGCAGgttggtttta ... catgttgcagATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATA
EST: AAGCTCTTTGAAGGAACCCCACAGCAG ATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATA
genomic: AAGCTCTTTGAAGGAACCCCACAGCAGgttggtttta ... catgttgcagATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATA
aagcttgtagttctggttgcatcttcaattattgagaatttcgtccatgttgcagATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATATACTGTGGACACGAGTATACATTG
tttcgtcc CT-rich tract
aattattgagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accgtgttgttgctgatgcaaagtgtatcaagtcagttacttgataagcttgtagttctggttgcatcttcaattattgagaatttcgtccatgttgcagATGCTATCTTCTCTTAAAAAGATCATGTCTTTGTCAGATGATACAAATATATACTGTGGACACGAGTATACATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - -gttgttg
- - - - - - ctgatgc
- - - - - - - - - - - - - - caagtca
- - - - - - - - - - - - - - - - - - - - - - - -gcttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggtt